Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
NKX3-1Q99801 BX119927.1-201ENST00000636596 1552 ntBASIC17.35■□□□□ 0.37
NKX3-1Q99801 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NKX3-1Q99801 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NKX3-1Q99801 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.35■□□□□ 0.37
NKX3-1Q99801 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NKX3-1Q99801 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NKX3-1Q99801 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NKX3-1Q99801 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
NKX3-1Q99801 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NKX3-1Q99801 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NKX3-1Q99801 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
NKX3-1Q99801 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
NKX3-1Q99801 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NKX3-1Q99801 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NKX3-1Q99801 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NKX3-1Q99801 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
NKX3-1Q99801 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
NKX3-1Q99801 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.34■□□□□ 0.37
NKX3-1Q99801 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.34■□□□□ 0.37
NKX3-1Q99801 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.34■□□□□ 0.37
NKX3-1Q99801 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
NKX3-1Q99801 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
NKX3-1Q99801 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
NKX3-1Q99801 GXYLT1P2-201ENST00000433312 1230 ntBASIC17.34■□□□□ 0.37
NKX3-1Q99801 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NKX3-1Q99801 KRT18P14-201ENST00000534205 1250 ntBASIC17.34■□□□□ 0.37
NKX3-1Q99801 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC17.34■□□□□ 0.37
NKX3-1Q99801 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.34■□□□□ 0.37
NKX3-1Q99801 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
NKX3-1Q99801 AC004408.2-201ENST00000623613 2777 ntBASIC17.34■□□□□ 0.37
NKX3-1Q99801 AC018445.3-201ENST00000624177 1945 ntBASIC17.34■□□□□ 0.37
NKX3-1Q99801 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.34■□□□□ 0.37
NKX3-1Q99801 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NKX3-1Q99801 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
NKX3-1Q99801 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NKX3-1Q99801 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NKX3-1Q99801 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NKX3-1Q99801 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NKX3-1Q99801 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NKX3-1Q99801 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
NKX3-1Q99801 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
NKX3-1Q99801 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
NKX3-1Q99801 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.33■□□□□ 0.36
NKX3-1Q99801 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC17.33■□□□□ 0.36
NKX3-1Q99801 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC17.33■□□□□ 0.36
NKX3-1Q99801 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.33■□□□□ 0.36
NKX3-1Q99801 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.33■□□□□ 0.36
NKX3-1Q99801 AC093484.2-201ENST00000580996 2166 ntBASIC17.33■□□□□ 0.36
NKX3-1Q99801 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NKX3-1Q99801 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NKX3-1Q99801 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NKX3-1Q99801 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
NKX3-1Q99801 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
NKX3-1Q99801 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
NKX3-1Q99801 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC17.32■□□□□ 0.36
NKX3-1Q99801 KRT18P5-201ENST00000436075 1291 ntBASIC17.32■□□□□ 0.36
NKX3-1Q99801 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.32■□□□□ 0.36
NKX3-1Q99801 UBE2DNL-204ENST00000602536 740 ntBASIC17.32■□□□□ 0.36
NKX3-1Q99801 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
NKX3-1Q99801 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC17.32■□□□□ 0.36
NKX3-1Q99801 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
NKX3-1Q99801 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC17.32■□□□□ 0.36
NKX3-1Q99801 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
NKX3-1Q99801 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC17.32■□□□□ 0.36
NKX3-1Q99801 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX3-1Q99801 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
NKX3-1Q99801 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
NKX3-1Q99801 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.31■□□□□ 0.36
NKX3-1Q99801 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NKX3-1Q99801 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
NKX3-1Q99801 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NKX3-1Q99801 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
NKX3-1Q99801 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.31■□□□□ 0.36
NKX3-1Q99801 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NKX3-1Q99801 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.31■□□□□ 0.36
NKX3-1Q99801 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NKX3-1Q99801 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NKX3-1Q99801 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
NKX3-1Q99801 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
NKX3-1Q99801 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NKX3-1Q99801 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms