Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 GXYLT1P6-201ENST00000456472 1187 ntBASIC21.04■□□□□ 0.96
CDX2Q99626 AC008040.2-201ENST00000461049 708 ntBASIC21.04■□□□□ 0.96
CDX2Q99626 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC21.04■□□□□ 0.96
CDX2Q99626 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CDX2Q99626 AC011298.2-201ENST00000617989 482 ntBASIC21.04■□□□□ 0.96
CDX2Q99626 AC096733.2-201ENST00000609937 1394 ntBASIC21.04■□□□□ 0.96
CDX2Q99626 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDX2Q99626 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CDX2Q99626 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.04■□□□□ 0.96
CDX2Q99626 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CDX2Q99626 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDX2Q99626 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CDX2Q99626 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDX2Q99626 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.03■□□□□ 0.96
CDX2Q99626 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CDX2Q99626 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDX2Q99626 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDX2Q99626 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDX2Q99626 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC21.03■□□□□ 0.96
CDX2Q99626 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC21.03■□□□□ 0.96
CDX2Q99626 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.03■□□□□ 0.96
CDX2Q99626 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDX2Q99626 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
CDX2Q99626 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CDX2Q99626 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.03■□□□□ 0.96
CDX2Q99626 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.02■□□□□ 0.96
CDX2Q99626 RCC2P6-201ENST00000526625 1557 ntBASIC21.02■□□□□ 0.96
CDX2Q99626 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CDX2Q99626 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CDX2Q99626 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CDX2Q99626 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CDX2Q99626 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.02■□□□□ 0.96
CDX2Q99626 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CDX2Q99626 AC092329.2-201ENST00000598402 547 ntBASIC21.02■□□□□ 0.96
CDX2Q99626 AL023803.3-201ENST00000615559 522 ntBASIC21.02■□□□□ 0.96
CDX2Q99626 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDX2Q99626 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC21.02■□□□□ 0.96
CDX2Q99626 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDX2Q99626 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CDX2Q99626 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.95
CDX2Q99626 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDX2Q99626 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.01■□□□□ 0.95
CDX2Q99626 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDX2Q99626 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDX2Q99626 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDX2Q99626 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.01■□□□□ 0.95
CDX2Q99626 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
CDX2Q99626 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDX2Q99626 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDX2Q99626 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
CDX2Q99626 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC21.01■□□□□ 0.95
CDX2Q99626 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC21.01■□□□□ 0.95
CDX2Q99626 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CDX2Q99626 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDX2Q99626 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CDX2Q99626 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CDX2Q99626 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
CDX2Q99626 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.01■□□□□ 0.95
CDX2Q99626 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.01■□□□□ 0.95
CDX2Q99626 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC21■□□□□ 0.95
CDX2Q99626 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC21■□□□□ 0.95
CDX2Q99626 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDX2Q99626 HLA-G-203ENST00000376818 1127 ntBASIC21■□□□□ 0.95
CDX2Q99626 TSPY17P-201ENST00000450329 467 ntBASIC21■□□□□ 0.95
CDX2Q99626 LY6E-213ENST00000522528 606 ntTSL 3 BASIC21■□□□□ 0.95
CDX2Q99626 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21■□□□□ 0.95
CDX2Q99626 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC21■□□□□ 0.95
CDX2Q99626 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC21■□□□□ 0.95
CDX2Q99626 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC21■□□□□ 0.95
CDX2Q99626 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDX2Q99626 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21■□□□□ 0.95
CDX2Q99626 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDX2Q99626 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDX2Q99626 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDX2Q99626 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDX2Q99626 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDX2Q99626 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CDX2Q99626 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDX2Q99626 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.99■□□□□ 0.95
CDX2Q99626 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.99■□□□□ 0.95
CDX2Q99626 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDX2Q99626 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CDX2Q99626 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.99■□□□□ 0.95
CDX2Q99626 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CDX2Q99626 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.99■□□□□ 0.95
CDX2Q99626 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CDX2Q99626 HLA-G-202ENST00000376815 851 ntBASIC20.98■□□□□ 0.95
CDX2Q99626 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CDX2Q99626 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.98■□□□□ 0.95
CDX2Q99626 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.98■□□□□ 0.95
CDX2Q99626 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDX2Q99626 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.98■□□□□ 0.95
CDX2Q99626 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.98■□□□□ 0.95
CDX2Q99626 HYMAI.1-201ENST00000620949 238 ntBASIC20.98■□□□□ 0.95
CDX2Q99626 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDX2Q99626 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.98■□□□□ 0.95
CDX2Q99626 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CDX2Q99626 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CDX2Q99626 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDX2Q99626 AP006587.1-201ENST00000534129 1502 ntBASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms