Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS35Q96QK1 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS35Q96QK1 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
VPS35Q96QK1 BX119927.1-201ENST00000636596 1552 ntBASIC19.78■□□□□ 0.76
VPS35Q96QK1 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS35Q96QK1 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS35Q96QK1 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 AL157384.1-201ENST00000445995 2473 ntBASIC19.78■□□□□ 0.76
VPS35Q96QK1 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS35Q96QK1 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
VPS35Q96QK1 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 TSPY20P-201ENST00000450910 630 ntBASIC19.78■□□□□ 0.76
VPS35Q96QK1 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS35Q96QK1 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 AC092667.1-201ENST00000434301 2586 ntBASIC19.78■□□□□ 0.76
VPS35Q96QK1 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS35Q96QK1 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS35Q96QK1 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS35Q96QK1 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS35Q96QK1 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS35Q96QK1 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.77■□□□□ 0.76
VPS35Q96QK1 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS35Q96QK1 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS35Q96QK1 LINC01521-201ENST00000504184 1943 ntBASIC19.77■□□□□ 0.76
VPS35Q96QK1 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
VPS35Q96QK1 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS35Q96QK1 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS35Q96QK1 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS35Q96QK1 POM121L13P-201ENST00000422362 380 ntBASIC19.77■□□□□ 0.76
VPS35Q96QK1 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS35Q96QK1 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
VPS35Q96QK1 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.77■□□□□ 0.76
VPS35Q96QK1 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.77■□□□□ 0.76
VPS35Q96QK1 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
VPS35Q96QK1 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS35Q96QK1 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS35Q96QK1 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS35Q96QK1 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
VPS35Q96QK1 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS35Q96QK1 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS35Q96QK1 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
VPS35Q96QK1 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS35Q96QK1 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.76■□□□□ 0.75
VPS35Q96QK1 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS35Q96QK1 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS35Q96QK1 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS35Q96QK1 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS35Q96QK1 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS35Q96QK1 FAM201B-201ENST00000458407 597 ntBASIC19.76■□□□□ 0.75
VPS35Q96QK1 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS35Q96QK1 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS35Q96QK1 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.76■□□□□ 0.75
VPS35Q96QK1 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
VPS35Q96QK1 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS35Q96QK1 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS35Q96QK1 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
VPS35Q96QK1 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS35Q96QK1 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS35Q96QK1 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS35Q96QK1 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS35Q96QK1 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
VPS35Q96QK1 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS35Q96QK1 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
VPS35Q96QK1 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS35Q96QK1 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS35Q96QK1 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
VPS35Q96QK1 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS35Q96QK1 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
VPS35Q96QK1 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS35Q96QK1 ABHD17AP1-201ENST00000358206 933 ntBASIC19.75■□□□□ 0.75
VPS35Q96QK1 KRT17P3-201ENST00000420566 1262 ntBASIC19.75■□□□□ 0.75
VPS35Q96QK1 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS35Q96QK1 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS35Q96QK1 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS35Q96QK1 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS35Q96QK1 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS35Q96QK1 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS35Q96QK1 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
VPS35Q96QK1 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS35Q96QK1 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS35Q96QK1 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
VPS35Q96QK1 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS35Q96QK1 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS35Q96QK1 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
VPS35Q96QK1 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS35Q96QK1 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms