Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.36■□□□□ 0.85
CHFRQ96EP1 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHFRQ96EP1 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHFRQ96EP1 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CHFRQ96EP1 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.36■□□□□ 0.85
CHFRQ96EP1 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHFRQ96EP1 NIFKP9-201ENST00000419265 221 ntBASIC20.36■□□□□ 0.85
CHFRQ96EP1 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.36■□□□□ 0.85
CHFRQ96EP1 AC116562.2-201ENST00000507042 360 ntBASIC20.36■□□□□ 0.85
CHFRQ96EP1 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
CHFRQ96EP1 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.36■□□□□ 0.85
CHFRQ96EP1 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CHFRQ96EP1 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHFRQ96EP1 CYP2D8P-201ENST00000433633 1490 ntBASIC20.36■□□□□ 0.85
CHFRQ96EP1 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CHFRQ96EP1 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHFRQ96EP1 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.36■□□□□ 0.85
CHFRQ96EP1 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CHFRQ96EP1 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHFRQ96EP1 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.35■□□□□ 0.85
CHFRQ96EP1 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.35■□□□□ 0.85
CHFRQ96EP1 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.35■□□□□ 0.85
CHFRQ96EP1 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHFRQ96EP1 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHFRQ96EP1 AL390955.1-201ENST00000428694 934 ntBASIC20.35■□□□□ 0.85
CHFRQ96EP1 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.35■□□□□ 0.85
CHFRQ96EP1 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.35■□□□□ 0.85
CHFRQ96EP1 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.35■□□□□ 0.85
CHFRQ96EP1 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHFRQ96EP1 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.35■□□□□ 0.85
CHFRQ96EP1 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHFRQ96EP1 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.35■□□□□ 0.85
CHFRQ96EP1 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.35■□□□□ 0.85
CHFRQ96EP1 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHFRQ96EP1 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CHFRQ96EP1 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHFRQ96EP1 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.34■□□□□ 0.85
CHFRQ96EP1 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHFRQ96EP1 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHFRQ96EP1 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.34■□□□□ 0.85
CHFRQ96EP1 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CHFRQ96EP1 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHFRQ96EP1 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.34■□□□□ 0.85
CHFRQ96EP1 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHFRQ96EP1 UNC93B2-201ENST00000285383 730 ntBASIC20.34■□□□□ 0.85
CHFRQ96EP1 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
CHFRQ96EP1 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.34■□□□□ 0.85
CHFRQ96EP1 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.34■□□□□ 0.85
CHFRQ96EP1 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHFRQ96EP1 CR392000.1-201ENST00000624770 1228 ntBASIC20.34■□□□□ 0.85
CHFRQ96EP1 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHFRQ96EP1 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHFRQ96EP1 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHFRQ96EP1 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
CHFRQ96EP1 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHFRQ96EP1 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CHFRQ96EP1 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CHFRQ96EP1 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHFRQ96EP1 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.33■□□□□ 0.85
CHFRQ96EP1 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHFRQ96EP1 MIR1238-201ENST00000408483 83 ntBASIC20.33■□□□□ 0.85
CHFRQ96EP1 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.33■□□□□ 0.85
CHFRQ96EP1 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.33■□□□□ 0.85
CHFRQ96EP1 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.33■□□□□ 0.85
CHFRQ96EP1 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.33■□□□□ 0.85
CHFRQ96EP1 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.33■□□□□ 0.85
CHFRQ96EP1 KRT8P17-201ENST00000453110 1448 ntBASIC20.33■□□□□ 0.84
CHFRQ96EP1 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CHFRQ96EP1 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.33■□□□□ 0.84
CHFRQ96EP1 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CHFRQ96EP1 FP700111.2-201ENST00000619190 1892 ntBASIC20.33■□□□□ 0.84
CHFRQ96EP1 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHFRQ96EP1 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CHFRQ96EP1 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHFRQ96EP1 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHFRQ96EP1 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHFRQ96EP1 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
CHFRQ96EP1 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.32■□□□□ 0.84
CHFRQ96EP1 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHFRQ96EP1 KSR1P1-201ENST00000446298 240 ntBASIC20.32■□□□□ 0.84
CHFRQ96EP1 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHFRQ96EP1 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.32■□□□□ 0.84
CHFRQ96EP1 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.32■□□□□ 0.84
CHFRQ96EP1 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHFRQ96EP1 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.32■□□□□ 0.84
CHFRQ96EP1 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.32■□□□□ 0.84
CHFRQ96EP1 AC010947.1-201ENST00000623454 693 ntBASIC20.32■□□□□ 0.84
CHFRQ96EP1 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CHFRQ96EP1 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHFRQ96EP1 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHFRQ96EP1 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
CHFRQ96EP1 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.31■□□□□ 0.84
CHFRQ96EP1 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHFRQ96EP1 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.31■□□□□ 0.84
CHFRQ96EP1 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.31■□□□□ 0.84
CHFRQ96EP1 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.31■□□□□ 0.84
CHFRQ96EP1 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHFRQ96EP1 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHFRQ96EP1 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHFRQ96EP1 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms