Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
RC3H1Q5TC82 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
RC3H1Q5TC82 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
RC3H1Q5TC82 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC25.27■■□□□ 1.64
RC3H1Q5TC82 AK4P3-201ENST00000418260 669 ntBASIC25.27■■□□□ 1.64
RC3H1Q5TC82 CRYGFP-201ENST00000418459 633 ntBASIC25.27■■□□□ 1.64
RC3H1Q5TC82 YBX1P10-201ENST00000444752 975 ntBASIC25.27■■□□□ 1.64
RC3H1Q5TC82 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC25.27■■□□□ 1.64
RC3H1Q5TC82 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC25.27■■□□□ 1.64
RC3H1Q5TC82 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC25.27■■□□□ 1.64
RC3H1Q5TC82 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC25.27■■□□□ 1.64
RC3H1Q5TC82 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
RC3H1Q5TC82 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
RC3H1Q5TC82 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC25.27■■□□□ 1.64
RC3H1Q5TC82 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC25.26■■□□□ 1.63
RC3H1Q5TC82 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
RC3H1Q5TC82 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RC3H1Q5TC82 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RC3H1Q5TC82 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
RC3H1Q5TC82 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC25.26■■□□□ 1.63
RC3H1Q5TC82 AC022616.7-201ENST00000525383 220 ntBASIC25.26■■□□□ 1.63
RC3H1Q5TC82 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
RC3H1Q5TC82 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RC3H1Q5TC82 AP000692.2-201ENST00000608391 879 ntBASIC25.26■■□□□ 1.63
RC3H1Q5TC82 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RC3H1Q5TC82 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
RC3H1Q5TC82 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RC3H1Q5TC82 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC25.26■■□□□ 1.63
RC3H1Q5TC82 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC25.26■■□□□ 1.63
RC3H1Q5TC82 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
RC3H1Q5TC82 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
RC3H1Q5TC82 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC25.25■■□□□ 1.63
RC3H1Q5TC82 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
RC3H1Q5TC82 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RC3H1Q5TC82 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC25.25■■□□□ 1.63
RC3H1Q5TC82 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
RC3H1Q5TC82 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RC3H1Q5TC82 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC25.25■■□□□ 1.63
RC3H1Q5TC82 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC25.25■■□□□ 1.63
RC3H1Q5TC82 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC25.25■■□□□ 1.63
RC3H1Q5TC82 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC25.25■■□□□ 1.63
RC3H1Q5TC82 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC25.25■■□□□ 1.63
RC3H1Q5TC82 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
RC3H1Q5TC82 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RC3H1Q5TC82 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC25.25■■□□□ 1.63
RC3H1Q5TC82 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC25.25■■□□□ 1.63
RC3H1Q5TC82 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RC3H1Q5TC82 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
RC3H1Q5TC82 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RC3H1Q5TC82 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RC3H1Q5TC82 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
RC3H1Q5TC82 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC25.24■■□□□ 1.63
RC3H1Q5TC82 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC25.24■■□□□ 1.63
RC3H1Q5TC82 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
RC3H1Q5TC82 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RC3H1Q5TC82 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
RC3H1Q5TC82 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC25.24■■□□□ 1.63
RC3H1Q5TC82 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RC3H1Q5TC82 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC25.24■■□□□ 1.63
RC3H1Q5TC82 MYC-208ENST00000641036 567 ntBASIC25.24■■□□□ 1.63
RC3H1Q5TC82 AL121603.2-201ENST00000557373 2117 ntBASIC25.24■■□□□ 1.63
RC3H1Q5TC82 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
RC3H1Q5TC82 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC25.23■■□□□ 1.63
RC3H1Q5TC82 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
RC3H1Q5TC82 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
RC3H1Q5TC82 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
RC3H1Q5TC82 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC25.23■■□□□ 1.63
RC3H1Q5TC82 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
RC3H1Q5TC82 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC25.23■■□□□ 1.63
RC3H1Q5TC82 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
RC3H1Q5TC82 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
RC3H1Q5TC82 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
RC3H1Q5TC82 FAM8A6P-201ENST00000407496 1135 ntBASIC25.23■■□□□ 1.63
RC3H1Q5TC82 ISCU-203ENST00000431221 799 ntTSL 2 BASIC25.23■■□□□ 1.63
RC3H1Q5TC82 AC091390.4-202ENST00000476426 537 ntBASIC25.23■■□□□ 1.63
RC3H1Q5TC82 LINC01238-205ENST00000567549 1107 ntBASIC25.23■■□□□ 1.63
RC3H1Q5TC82 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC25.23■■□□□ 1.63
RC3H1Q5TC82 AC091076.1-201ENST00000610741 619 ntBASIC25.23■■□□□ 1.63
RC3H1Q5TC82 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC25.23■■□□□ 1.63
RC3H1Q5TC82 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
RC3H1Q5TC82 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
RC3H1Q5TC82 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
RC3H1Q5TC82 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
RC3H1Q5TC82 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
RC3H1Q5TC82 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC25.22■■□□□ 1.63
RC3H1Q5TC82 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC25.22■■□□□ 1.63
RC3H1Q5TC82 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RC3H1Q5TC82 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RC3H1Q5TC82 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC25.22■■□□□ 1.63
RC3H1Q5TC82 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RC3H1Q5TC82 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
RC3H1Q5TC82 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
RC3H1Q5TC82 HMGA1P5-201ENST00000412453 271 ntBASIC25.22■■□□□ 1.63
RC3H1Q5TC82 AC117947.1-201ENST00000427448 529 ntBASIC25.22■■□□□ 1.63
RC3H1Q5TC82 TUBB8P6-201ENST00000436895 1288 ntBASIC25.22■■□□□ 1.63
RC3H1Q5TC82 AL138966.2-201ENST00000621997 464 ntBASIC25.22■■□□□ 1.63
RC3H1Q5TC82 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
RC3H1Q5TC82 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
RC3H1Q5TC82 AL024507.2-201ENST00000606070 2574 ntBASIC25.22■■□□□ 1.63
RC3H1Q5TC82 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms