Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIM2P55344 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.93■□□□□ 0.62
LIM2P55344 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LIM2P55344 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIM2P55344 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIM2P55344 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIM2P55344 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LIM2P55344 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.93■□□□□ 0.62
LIM2P55344 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIM2P55344 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
LIM2P55344 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.92■□□□□ 0.62
LIM2P55344 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIM2P55344 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIM2P55344 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.92■□□□□ 0.62
LIM2P55344 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
LIM2P55344 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
LIM2P55344 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIM2P55344 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIM2P55344 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIM2P55344 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIM2P55344 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.92■□□□□ 0.62
LIM2P55344 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.92■□□□□ 0.62
LIM2P55344 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.92■□□□□ 0.62
LIM2P55344 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.92■□□□□ 0.62
LIM2P55344 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.92■□□□□ 0.62
LIM2P55344 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIM2P55344 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIM2P55344 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.92■□□□□ 0.62
LIM2P55344 PNMA6B-201ENST00000538162 1200 ntBASIC18.92■□□□□ 0.62
LIM2P55344 KRT18P6-201ENST00000555540 1265 ntBASIC18.92■□□□□ 0.62
LIM2P55344 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.92■□□□□ 0.62
LIM2P55344 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIM2P55344 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIM2P55344 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIM2P55344 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.92■□□□□ 0.62
LIM2P55344 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.92■□□□□ 0.62
LIM2P55344 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIM2P55344 BX119927.1-201ENST00000636596 1552 ntBASIC18.92■□□□□ 0.62
LIM2P55344 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIM2P55344 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.92■□□□□ 0.62
LIM2P55344 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
LIM2P55344 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.92■□□□□ 0.62
LIM2P55344 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIM2P55344 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.91■□□□□ 0.62
LIM2P55344 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.91■□□□□ 0.62
LIM2P55344 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.91■□□□□ 0.62
LIM2P55344 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.91■□□□□ 0.62
LIM2P55344 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 AL390719.1-204ENST00000412397 1219 ntBASIC18.91■□□□□ 0.62
LIM2P55344 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.91■□□□□ 0.62
LIM2P55344 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.91■□□□□ 0.62
LIM2P55344 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.91■□□□□ 0.62
LIM2P55344 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.91■□□□□ 0.62
LIM2P55344 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.91■□□□□ 0.62
LIM2P55344 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.91■□□□□ 0.62
LIM2P55344 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
LIM2P55344 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIM2P55344 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
LIM2P55344 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
LIM2P55344 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.9■□□□□ 0.62
LIM2P55344 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.9■□□□□ 0.62
LIM2P55344 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
LIM2P55344 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIM2P55344 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIM2P55344 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIM2P55344 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIM2P55344 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIM2P55344 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.9■□□□□ 0.62
LIM2P55344 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.9■□□□□ 0.62
LIM2P55344 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.9■□□□□ 0.62
LIM2P55344 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.9■□□□□ 0.62
LIM2P55344 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
LIM2P55344 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.9■□□□□ 0.62
LIM2P55344 AC007952.6-201ENST00000573168 2673 ntBASIC18.9■□□□□ 0.62
LIM2P55344 AC003957.1-201ENST00000625108 2673 ntBASIC18.9■□□□□ 0.62
LIM2P55344 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.9■□□□□ 0.62
LIM2P55344 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
LIM2P55344 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIM2P55344 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIM2P55344 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIM2P55344 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIM2P55344 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIM2P55344 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIM2P55344 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms