Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX2P48431 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX2P48431 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX2P48431 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.51■□□□□ 0.39
SOX2P48431 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
SOX2P48431 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX2P48431 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
SOX2P48431 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX2P48431 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SOX2P48431 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX2P48431 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.51■□□□□ 0.39
SOX2P48431 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SOX2P48431 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX2P48431 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC17.51■□□□□ 0.39
SOX2P48431 KRT18P20-201ENST00000548986 1279 ntBASIC17.51■□□□□ 0.39
SOX2P48431 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SOX2P48431 AC243732.1-201ENST00000612648 864 ntBASIC17.51■□□□□ 0.39
SOX2P48431 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX2P48431 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.51■□□□□ 0.39
SOX2P48431 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX2P48431 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX2P48431 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX2P48431 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX2P48431 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX2P48431 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC17.51■□□□□ 0.39
SOX2P48431 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC17.5■□□□□ 0.39
SOX2P48431 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SOX2P48431 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX2P48431 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.5■□□□□ 0.39
SOX2P48431 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX2P48431 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SOX2P48431 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SOX2P48431 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX2P48431 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.5■□□□□ 0.39
SOX2P48431 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
SOX2P48431 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX2P48431 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX2P48431 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
SOX2P48431 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SOX2P48431 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.5■□□□□ 0.39
SOX2P48431 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC17.5■□□□□ 0.39
SOX2P48431 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX2P48431 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX2P48431 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX2P48431 AC004408.2-201ENST00000623613 2777 ntBASIC17.5■□□□□ 0.39
SOX2P48431 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX2P48431 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX2P48431 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
SOX2P48431 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX2P48431 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SOX2P48431 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.49■□□□□ 0.39
SOX2P48431 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX2P48431 TREX1-205ENST00000625293 1783 ntBASIC17.49■□□□□ 0.39
SOX2P48431 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX2P48431 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX2P48431 COX20-201ENST00000366528 568 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX2P48431 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX2P48431 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX2P48431 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX2P48431 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX2P48431 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SOX2P48431 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX2P48431 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC17.49■□□□□ 0.39
SOX2P48431 TERF1P2-201ENST00000583350 1212 ntBASIC17.49■□□□□ 0.39
SOX2P48431 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SOX2P48431 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC17.49■□□□□ 0.39
SOX2P48431 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SOX2P48431 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX2P48431 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX2P48431 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
SOX2P48431 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX2P48431 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX2P48431 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX2P48431 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX2P48431 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.49■□□□□ 0.39
SOX2P48431 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX2P48431 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX2P48431 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX2P48431 CD37-204ENST00000535669 1674 ntTSL 2 BASIC17.48■□□□□ 0.39
SOX2P48431 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX2P48431 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
SOX2P48431 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX2P48431 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX2P48431 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX2P48431 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.48■□□□□ 0.39
SOX2P48431 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.48■□□□□ 0.39
SOX2P48431 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.48■□□□□ 0.39
SOX2P48431 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX2P48431 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX2P48431 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX2P48431 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX2P48431 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC17.48■□□□□ 0.39
SOX2P48431 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX2P48431 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX2P48431 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SOX2P48431 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC17.48■□□□□ 0.39
SOX2P48431 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC17.48■□□□□ 0.39
SOX2P48431 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
SOX2P48431 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.48■□□□□ 0.39
SOX2P48431 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms