Protein–RNA interactions for Protein: P29320

EPHA3, Ephrin type-A receptor 3, humanhuman

Predictions only

Length 983 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA3P29320 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
EPHA3P29320 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHA3P29320 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHA3P29320 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHA3P29320 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.37■□□□□ 0.69
EPHA3P29320 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.37■□□□□ 0.69
EPHA3P29320 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
EPHA3P29320 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.37■□□□□ 0.69
EPHA3P29320 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.37■□□□□ 0.69
EPHA3P29320 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
EPHA3P29320 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHA3P29320 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHA3P29320 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHA3P29320 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHA3P29320 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHA3P29320 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHA3P29320 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.37■□□□□ 0.69
EPHA3P29320 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHA3P29320 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.37■□□□□ 0.69
EPHA3P29320 CDV3P1-201ENST00000471403 739 ntBASIC19.37■□□□□ 0.69
EPHA3P29320 AL139246.5-201ENST00000606645 996 ntBASIC19.37■□□□□ 0.69
EPHA3P29320 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
EPHA3P29320 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.37■□□□□ 0.69
EPHA3P29320 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHA3P29320 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHA3P29320 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.37■□□□□ 0.69
EPHA3P29320 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHA3P29320 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.37■□□□□ 0.69
EPHA3P29320 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHA3P29320 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHA3P29320 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHA3P29320 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
EPHA3P29320 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.36■□□□□ 0.69
EPHA3P29320 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
EPHA3P29320 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.36■□□□□ 0.69
EPHA3P29320 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.36■□□□□ 0.69
EPHA3P29320 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
EPHA3P29320 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
EPHA3P29320 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.36■□□□□ 0.69
EPHA3P29320 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
EPHA3P29320 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
EPHA3P29320 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
EPHA3P29320 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
EPHA3P29320 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.36■□□□□ 0.69
EPHA3P29320 TERF1P2-201ENST00000583350 1212 ntBASIC19.36■□□□□ 0.69
EPHA3P29320 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
EPHA3P29320 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
EPHA3P29320 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
EPHA3P29320 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
EPHA3P29320 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
EPHA3P29320 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
EPHA3P29320 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
EPHA3P29320 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
EPHA3P29320 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
EPHA3P29320 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
EPHA3P29320 AC004854.2-201ENST00000608450 1441 ntBASIC19.35■□□□□ 0.69
EPHA3P29320 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.35■□□□□ 0.69
EPHA3P29320 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
EPHA3P29320 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.35■□□□□ 0.69
EPHA3P29320 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.35■□□□□ 0.69
EPHA3P29320 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
EPHA3P29320 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
EPHA3P29320 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
EPHA3P29320 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.35■□□□□ 0.69
EPHA3P29320 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
EPHA3P29320 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
EPHA3P29320 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.35■□□□□ 0.69
EPHA3P29320 AL356652.1-201ENST00000615962 565 ntBASIC19.35■□□□□ 0.69
EPHA3P29320 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
EPHA3P29320 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.35■□□□□ 0.69
EPHA3P29320 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
EPHA3P29320 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
EPHA3P29320 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.35■□□□□ 0.69
EPHA3P29320 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
EPHA3P29320 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.35■□□□□ 0.69
EPHA3P29320 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
EPHA3P29320 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.35■□□□□ 0.69
EPHA3P29320 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
EPHA3P29320 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
EPHA3P29320 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.35■□□□□ 0.69
EPHA3P29320 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
EPHA3P29320 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
EPHA3P29320 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.34■□□□□ 0.69
EPHA3P29320 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
EPHA3P29320 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
EPHA3P29320 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
EPHA3P29320 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.34■□□□□ 0.69
EPHA3P29320 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.34■□□□□ 0.69
EPHA3P29320 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.34■□□□□ 0.69
EPHA3P29320 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.34■□□□□ 0.69
EPHA3P29320 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.34■□□□□ 0.69
EPHA3P29320 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.34■□□□□ 0.69
EPHA3P29320 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
EPHA3P29320 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
EPHA3P29320 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
EPHA3P29320 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.34■□□□□ 0.69
EPHA3P29320 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
EPHA3P29320 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
EPHA3P29320 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
EPHA3P29320 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms