Protein–RNA interactions for Protein: P28007

GAR1, H/ACA ribonucleoprotein complex subunit GAR1, yeastyeast

Known RBP Predictions only

Length 205 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
GAR1P28007 SEC31YDL195W 3822 nt1.72□□□□□ -2.13
GAR1P28007 TOR2YKL203C 7425 nt1.72□□□□□ -2.13
GAR1P28007 YLL006W-AYLL006W-A 177 nt1.71□□□□□ -2.14
GAR1P28007 TMA7YLR262C-A 195 nt1.71□□□□□ -2.14
GAR1P28007 SWI4YER111C 3282 nt1.71□□□□□ -2.14
GAR1P28007 SPT7YBR081C 3999 nt1.68□□□□□ -2.14
GAR1P28007 YNL284C-BYNL284C-B 5268 nt1.67□□□□□ -2.14
GAR1P28007 CLU1YMR012W 3834 nt1.65□□□□□ -2.15
GAR1P28007 NUP145YGL092W 3954 nt1.65□□□□□ -2.15
GAR1P28007 YHR214C-BYHR214C-B 5382 nt1.63□□□□□ -2.15
GAR1P28007 SOV1YMR066W 2697 nt1.63□□□□□ -2.15
GAR1P28007 LAA1YJL207C 6045 nt1.63□□□□□ -2.15
GAR1P28007 PEP1YBL017C 4740 nt1.61□□□□□ -2.15
GAR1P28007 snR77snR77 88 nt1.61□□□□□ -2.15
GAR1P28007 CDC39YCR093W 6327 nt1.59□□□□□ -2.16
GAR1P28007 VPS15YBR097W 4365 nt1.56□□□□□ -2.16
GAR1P28007 BST1YFL025C 3090 nt1.55□□□□□ -2.16
GAR1P28007 YPR117WYPR117W 7470 nt1.54□□□□□ -2.16
GAR1P28007 MEC1YBR136W 7107 nt1.54□□□□□ -2.16
GAR1P28007 tT(UGU)HtT(UGU)H 72 nt1.53□□□□□ -2.16
GAR1P28007 VAM6YDL077C 3150 nt1.53□□□□□ -2.17
GAR1P28007 CFT1YDR301W 4074 nt1.52□□□□□ -2.17
GAR1P28007 YOR316C-AYOR316C-A 210 nt1.52□□□□□ -2.17
GAR1P28007 NUP188YML103C 4968 nt1.51□□□□□ -2.17
GAR1P28007 YMR247W-AYMR247W-A 144 nt1.51□□□□□ -2.17
GAR1P28007 YGR130CYGR130C 2451 nt1.51□□□□□ -2.17
GAR1P28007 MON2YNL297C 4911 nt1.5□□□□□ -2.17
GAR1P28007 YMR272W-BYMR272W-B 108 nt1.49□□□□□ -2.17
GAR1P28007 IRA1YBR140C 9279 nt1.48□□□□□ -2.17
GAR1P28007 PMD1YER132C 5262 nt1.46□□□□□ -2.18
GAR1P28007 DNF3YMR162C 4971 nt1.41□□□□□ -2.18
GAR1P28007 SBH2YER019C-A 267 nt1.41□□□□□ -2.18
GAR1P28007 BRR2YER172C 6492 nt1.4□□□□□ -2.19
GAR1P28007 SSK2YNR031C 4740 nt1.4□□□□□ -2.19
GAR1P28007 MYO1YHR023W 5787 nt1.36□□□□□ -2.19
GAR1P28007 YOR093CYOR093C 4947 nt1.35□□□□□ -2.19
GAR1P28007 tC(GCA)QtC(GCA)Q 76 nt1.32□□□□□ -2.2
GAR1P28007 CCH1YGR217W 6120 nt1.3□□□□□ -2.2
GAR1P28007 YJL113WYJL113W 4647 nt1.3□□□□□ -2.2
GAR1P28007 YOR192C-BYOR192C-B 5313 nt1.28□□□□□ -2.21
GAR1P28007 FIG2YCR089W 4830 nt1.25□□□□□ -2.21
GAR1P28007 YBL100W-BYBL100W-B 5313 nt1.24□□□□□ -2.21
GAR1P28007 HKR1YDR420W 5409 nt1.21□□□□□ -2.22
GAR1P28007 BUD3YCL014W 4911 nt1.2□□□□□ -2.22
GAR1P28007 YML100W-AYML100W-A 174 nt1.2□□□□□ -2.22
GAR1P28007 YPR137C-BYPR137C-B 5268 nt1.19□□□□□ -2.22
GAR1P28007 YJR029WYJR029W 5268 nt1.19□□□□□ -2.22
GAR1P28007 tQ(UUG)E2tQ(UUG)E2 72 nt1.19□□□□□ -2.22
GAR1P28007 RKR1YMR247C 4689 nt1.15□□□□□ -2.23
GAR1P28007 YOL014WYOL014W 375 nt1.14□□□□□ -2.23
GAR1P28007 RPL41BYDL133C-A 78 nt1.13□□□□□ -2.23
GAR1P28007 LTE1YAL024C 4308 nt1.11□□□□□ -2.23
GAR1P28007 SCC2YDR180W 4482 nt1.1□□□□□ -2.23
GAR1P28007 ESP1YGR098C 4893 nt1.07□□□□□ -2.24
GAR1P28007 PAU24YBR301W 363 nt1.07□□□□□ -2.24
GAR1P28007 tH(GUG)E1tH(GUG)E1 72 nt1.06□□□□□ -2.24
GAR1P28007 tH(GUG)E2tH(GUG)E2 72 nt1.06□□□□□ -2.24
GAR1P28007 tH(GUG)G1tH(GUG)G1 72 nt1.06□□□□□ -2.24
GAR1P28007 tH(GUG)G2tH(GUG)G2 72 nt1.06□□□□□ -2.24
GAR1P28007 tH(GUG)HtH(GUG)H 72 nt1.06□□□□□ -2.24
GAR1P28007 tH(GUG)KtH(GUG)K 72 nt1.06□□□□□ -2.24
GAR1P28007 tH(GUG)MtH(GUG)M 72 nt1.06□□□□□ -2.24
GAR1P28007 IML1YJR138W 4755 nt1.05□□□□□ -2.24
GAR1P28007 YKL145W-AYKL145W-A 93 nt1.04□□□□□ -2.24
GAR1P28007 FMP27YLR454W 7887 nt1.04□□□□□ -2.24
GAR1P28007 YOR335W-AYOR335W-A 81 nt1.02□□□□□ -2.25
GAR1P28007 DOP1YDR141C 5097 nt0.99□□□□□ -2.25
GAR1P28007 snR6snR6 112 nt0.99□□□□□ -2.25
GAR1P28007 IQG1YPL242C 4488 nt0.99□□□□□ -2.25
GAR1P28007 snR58snR58 96 nt0.97□□□□□ -2.25
GAR1P28007 tV(UAC)BtV(UAC)B 74 nt0.97□□□□□ -2.25
GAR1P28007 tV(UAC)DtV(UAC)D 74 nt0.97□□□□□ -2.25
GAR1P28007 THO2YNL139C 4794 nt0.93□□□□□ -2.26
GAR1P28007 BEM2YER155C 6504 nt0.93□□□□□ -2.26
GAR1P28007 MLP1YKR095W 5628 nt0.91□□□□□ -2.26
GAR1P28007 YOR186C-AYOR186C-A 210 nt0.86□□□□□ -2.27
GAR1P28007 EMT1tM(CAU)D 73 nt0.84□□□□□ -2.27
GAR1P28007 EMT5tM(CAU)J1 73 nt0.84□□□□□ -2.27
GAR1P28007 EMT3tM(CAU)J2 73 nt0.84□□□□□ -2.27
GAR1P28007 EMT4tM(CAU)M 73 nt0.84□□□□□ -2.27
GAR1P28007 EMT2tM(CAU)O2 73 nt0.84□□□□□ -2.27
GAR1P28007 snR73snR73 106 nt0.82□□□□□ -2.28
GAR1P28007 YMR272W-AYMR272W-A 114 nt0.78□□□□□ -2.28
GAR1P28007 PAU9YBL108C-A 129 nt0.75□□□□□ -2.29
GAR1P28007 UTP20YBL004W 7482 nt0.67□□□□□ -2.3
GAR1P28007 YPR159C-AYPR159C-A 102 nt0.65□□□□□ -2.31
GAR1P28007 snR161snR161 161 nt0.64□□□□□ -2.31
GAR1P28007 tA(UGC)QtA(UGC)Q 76 nt0.61□□□□□ -2.31
GAR1P28007 tT(AGU)BtT(AGU)B 73 nt0.59□□□□□ -2.31
GAR1P28007 tT(AGU)CtT(AGU)C 73 nt0.59□□□□□ -2.31
GAR1P28007 tT(AGU)DtT(AGU)D 73 nt0.59□□□□□ -2.31
GAR1P28007 tT(AGU)HtT(AGU)H 73 nt0.59□□□□□ -2.31
GAR1P28007 tT(AGU)I1tT(AGU)I1 73 nt0.59□□□□□ -2.31
GAR1P28007 tT(AGU)I2tT(AGU)I2 73 nt0.59□□□□□ -2.31
GAR1P28007 tT(AGU)JtT(AGU)J 73 nt0.59□□□□□ -2.31
GAR1P28007 tT(AGU)N1tT(AGU)N1 73 nt0.59□□□□□ -2.31
GAR1P28007 tT(AGU)N2tT(AGU)N2 73 nt0.59□□□□□ -2.31
GAR1P28007 tT(AGU)O1tT(AGU)O1 73 nt0.59□□□□□ -2.31
GAR1P28007 tT(AGU)O2tT(AGU)O2 73 nt0.59□□□□□ -2.31
GAR1P28007 URB1YKL014C 5295 nt0.58□□□□□ -2.32
Retrieved 100 of 7,029 protein–RNA pairs in 13.1 ms