Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL9A1P20849 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL9A1P20849 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.62■□□□□ 0.89
COL9A1P20849 YBX1P2-201ENST00000489612 999 ntBASIC20.62■□□□□ 0.89
COL9A1P20849 AP002982.1-201ENST00000492365 877 ntBASIC20.62■□□□□ 0.89
COL9A1P20849 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.62■□□□□ 0.89
COL9A1P20849 AL356652.1-201ENST00000615962 565 ntBASIC20.62■□□□□ 0.89
COL9A1P20849 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL9A1P20849 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL9A1P20849 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
COL9A1P20849 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL9A1P20849 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.62■□□□□ 0.89
COL9A1P20849 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.62■□□□□ 0.89
COL9A1P20849 ECEL1P1-201ENST00000373592 1742 ntBASIC20.61■□□□□ 0.89
COL9A1P20849 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL9A1P20849 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL9A1P20849 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.61■□□□□ 0.89
COL9A1P20849 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.61■□□□□ 0.89
COL9A1P20849 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.61■□□□□ 0.89
COL9A1P20849 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.61■□□□□ 0.89
COL9A1P20849 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.61■□□□□ 0.89
COL9A1P20849 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.61■□□□□ 0.89
COL9A1P20849 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.61■□□□□ 0.89
COL9A1P20849 AC008622.2-201ENST00000617006 1229 ntBASIC20.61■□□□□ 0.89
COL9A1P20849 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.61■□□□□ 0.89
COL9A1P20849 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL9A1P20849 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL9A1P20849 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
COL9A1P20849 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL9A1P20849 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL9A1P20849 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
COL9A1P20849 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.6■□□□□ 0.89
COL9A1P20849 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL9A1P20849 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
COL9A1P20849 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL9A1P20849 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC20.6■□□□□ 0.89
COL9A1P20849 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL9A1P20849 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.6■□□□□ 0.89
COL9A1P20849 AC009078.2-202ENST00000463353 338 ntBASIC20.6■□□□□ 0.89
COL9A1P20849 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
COL9A1P20849 CKBP1-201ENST00000565489 1086 ntBASIC20.6■□□□□ 0.89
COL9A1P20849 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.6■□□□□ 0.89
COL9A1P20849 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.6■□□□□ 0.89
COL9A1P20849 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.6■□□□□ 0.89
COL9A1P20849 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL9A1P20849 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.59■□□□□ 0.89
COL9A1P20849 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.59■□□□□ 0.89
COL9A1P20849 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL9A1P20849 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL9A1P20849 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL9A1P20849 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL9A1P20849 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.59■□□□□ 0.89
COL9A1P20849 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
COL9A1P20849 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL9A1P20849 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL9A1P20849 HLA-G-203ENST00000376818 1127 ntBASIC20.59■□□□□ 0.89
COL9A1P20849 FAM220CP-201ENST00000395253 831 ntBASIC20.59■□□□□ 0.89
COL9A1P20849 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.59■□□□□ 0.89
COL9A1P20849 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.59■□□□□ 0.89
COL9A1P20849 PRELID1P1-202ENST00000567272 903 ntBASIC20.59■□□□□ 0.89
COL9A1P20849 SLC25A1P4-201ENST00000567977 778 ntBASIC20.59■□□□□ 0.89
COL9A1P20849 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20.59■□□□□ 0.89
COL9A1P20849 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL9A1P20849 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL9A1P20849 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL9A1P20849 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL9A1P20849 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL9A1P20849 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL9A1P20849 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL9A1P20849 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL9A1P20849 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL9A1P20849 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL9A1P20849 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL9A1P20849 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.58■□□□□ 0.89
COL9A1P20849 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL9A1P20849 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.58■□□□□ 0.89
COL9A1P20849 TSPY14P-201ENST00000303979 915 ntBASIC20.58■□□□□ 0.89
COL9A1P20849 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL9A1P20849 AC244107.1-201ENST00000442033 332 ntBASIC20.58■□□□□ 0.89
COL9A1P20849 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.58■□□□□ 0.89
COL9A1P20849 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.58■□□□□ 0.89
COL9A1P20849 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.58■□□□□ 0.89
COL9A1P20849 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL9A1P20849 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC20.58■□□□□ 0.89
COL9A1P20849 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.58■□□□□ 0.89
COL9A1P20849 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
COL9A1P20849 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL9A1P20849 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.58■□□□□ 0.88
COL9A1P20849 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL9A1P20849 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
COL9A1P20849 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.58■□□□□ 0.88
COL9A1P20849 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL9A1P20849 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.57■□□□□ 0.88
COL9A1P20849 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL9A1P20849 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL9A1P20849 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
COL9A1P20849 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL9A1P20849 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL9A1P20849 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
COL9A1P20849 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms