Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC23.55■■□□□ 1.36
HMGB1P09429 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC23.55■■□□□ 1.36
HMGB1P09429 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC23.55■■□□□ 1.36
HMGB1P09429 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC23.55■■□□□ 1.36
HMGB1P09429 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HMGB1P09429 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC23.55■■□□□ 1.36
HMGB1P09429 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
HMGB1P09429 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
HMGB1P09429 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HMGB1P09429 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC23.54■■□□□ 1.36
HMGB1P09429 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
HMGB1P09429 AP001271.2-201ENST00000624018 1556 ntBASIC23.54■■□□□ 1.36
HMGB1P09429 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
HMGB1P09429 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
HMGB1P09429 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC23.54■■□□□ 1.36
HMGB1P09429 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
HMGB1P09429 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
HMGB1P09429 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.54■■□□□ 1.36
HMGB1P09429 AC097658.1-201ENST00000475555 843 ntBASIC23.54■■□□□ 1.36
HMGB1P09429 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC23.54■■□□□ 1.36
HMGB1P09429 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC23.54■■□□□ 1.36
HMGB1P09429 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC23.54■■□□□ 1.36
HMGB1P09429 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC23.54■■□□□ 1.36
HMGB1P09429 AL109923.1-201ENST00000618799 583 ntBASIC23.54■■□□□ 1.36
HMGB1P09429 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC23.54■■□□□ 1.36
HMGB1P09429 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
HMGB1P09429 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
HMGB1P09429 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
HMGB1P09429 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
HMGB1P09429 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC23.53■■□□□ 1.36
HMGB1P09429 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC23.53■■□□□ 1.36
HMGB1P09429 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
HMGB1P09429 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.53■■□□□ 1.36
HMGB1P09429 BET1L-207ENST00000529614 560 ntTSL 5 BASIC23.53■■□□□ 1.36
HMGB1P09429 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC23.53■■□□□ 1.36
HMGB1P09429 AC005829.2-201ENST00000571422 1056 ntBASIC23.53■■□□□ 1.36
HMGB1P09429 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC23.53■■□□□ 1.36
HMGB1P09429 MYC-209ENST00000641252 345 ntBASIC23.53■■□□□ 1.36
HMGB1P09429 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
HMGB1P09429 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC23.53■■□□□ 1.36
HMGB1P09429 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HMGB1P09429 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC23.52■■□□□ 1.36
HMGB1P09429 PHGDH-210ENST00000641115 1638 ntBASIC23.52■■□□□ 1.36
HMGB1P09429 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC23.52■■□□□ 1.36
HMGB1P09429 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC23.52■■□□□ 1.36
HMGB1P09429 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HMGB1P09429 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC23.52■■□□□ 1.36
HMGB1P09429 AL390719.1-204ENST00000412397 1219 ntBASIC23.52■■□□□ 1.36
HMGB1P09429 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC23.52■■□□□ 1.36
HMGB1P09429 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC23.52■■□□□ 1.36
HMGB1P09429 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC23.52■■□□□ 1.36
HMGB1P09429 GAMT-205ENST00000640762 751 ntTSL 5 BASIC23.52■■□□□ 1.36
HMGB1P09429 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
HMGB1P09429 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HMGB1P09429 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
HMGB1P09429 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
HMGB1P09429 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
HMGB1P09429 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HMGB1P09429 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
HMGB1P09429 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC23.51■■□□□ 1.35
HMGB1P09429 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC23.51■■□□□ 1.35
HMGB1P09429 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC23.51■■□□□ 1.35
HMGB1P09429 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HMGB1P09429 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HMGB1P09429 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC23.51■■□□□ 1.35
HMGB1P09429 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC23.51■■□□□ 1.35
HMGB1P09429 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC23.51■■□□□ 1.35
HMGB1P09429 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC23.51■■□□□ 1.35
HMGB1P09429 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
HMGB1P09429 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HMGB1P09429 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HMGB1P09429 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
HMGB1P09429 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
HMGB1P09429 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
HMGB1P09429 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HMGB1P09429 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
HMGB1P09429 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
HMGB1P09429 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
HMGB1P09429 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC23.5■■□□□ 1.35
HMGB1P09429 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
HMGB1P09429 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
HMGB1P09429 GGT1-206ENST00000404223 952 ntTSL 2 BASIC23.5■■□□□ 1.35
HMGB1P09429 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
HMGB1P09429 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
HMGB1P09429 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
HMGB1P09429 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC23.5■■□□□ 1.35
HMGB1P09429 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC23.5■■□□□ 1.35
HMGB1P09429 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
HMGB1P09429 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
HMGB1P09429 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
HMGB1P09429 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
HMGB1P09429 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC23.49■■□□□ 1.35
HMGB1P09429 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.35
HMGB1P09429 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
HMGB1P09429 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
HMGB1P09429 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
HMGB1P09429 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
HMGB1P09429 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
HMGB1P09429 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC23.49■■□□□ 1.35
HMGB1P09429 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms