Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
APOBP04114 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
APOBP04114 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC12.54□□□□□ -0.4
APOBP04114 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
APOBP04114 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
APOBP04114 LIN28AP1-201ENST00000429574 405 ntBASIC12.54□□□□□ -0.4
APOBP04114 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC12.54□□□□□ -0.4
APOBP04114 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC12.54□□□□□ -0.4
APOBP04114 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
APOBP04114 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC12.54□□□□□ -0.4
APOBP04114 ME2-208ENST00000638937 2471 ntTSL 5 BASIC12.54□□□□□ -0.4
APOBP04114 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC12.54□□□□□ -0.4
APOBP04114 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
APOBP04114 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC12.54□□□□□ -0.4
APOBP04114 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
APOBP04114 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC12.54□□□□□ -0.4
APOBP04114 AP000692.2-201ENST00000608391 879 ntBASIC12.54□□□□□ -0.4
APOBP04114 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC12.54□□□□□ -0.4
APOBP04114 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
APOBP04114 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
APOBP04114 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC12.53□□□□□ -0.4
APOBP04114 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
APOBP04114 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
APOBP04114 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
APOBP04114 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC12.53□□□□□ -0.4
APOBP04114 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC12.53□□□□□ -0.4
APOBP04114 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
APOBP04114 PTBP1P-201ENST00000554374 1601 ntBASIC12.53□□□□□ -0.4
APOBP04114 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
APOBP04114 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
APOBP04114 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC12.53□□□□□ -0.4
APOBP04114 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC12.53□□□□□ -0.4
APOBP04114 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC12.53□□□□□ -0.4
APOBP04114 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC12.53□□□□□ -0.4
APOBP04114 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC12.53□□□□□ -0.4
APOBP04114 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC12.53□□□□□ -0.4
APOBP04114 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC12.53□□□□□ -0.4
APOBP04114 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
APOBP04114 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
APOBP04114 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
APOBP04114 AC011484.1-201ENST00000377652 1995 ntBASIC12.53□□□□□ -0.4
APOBP04114 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC12.53□□□□□ -0.4
APOBP04114 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC12.53□□□□□ -0.4
APOBP04114 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC12.53□□□□□ -0.4
APOBP04114 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC12.53□□□□□ -0.4
APOBP04114 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC12.53□□□□□ -0.4
APOBP04114 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
APOBP04114 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
APOBP04114 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC12.53□□□□□ -0.4
APOBP04114 AC092338.2-201ENST00000568827 1415 ntBASIC12.53□□□□□ -0.4
APOBP04114 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC12.52□□□□□ -0.4
APOBP04114 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
APOBP04114 AC007663.1-201ENST00000438948 1240 ntBASIC12.52□□□□□ -0.4
APOBP04114 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
APOBP04114 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC12.52□□□□□ -0.4
APOBP04114 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC12.52□□□□□ -0.4
APOBP04114 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
APOBP04114 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC12.52□□□□□ -0.4
APOBP04114 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
APOBP04114 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC12.52□□□□□ -0.4
APOBP04114 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
APOBP04114 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.4
APOBP04114 AC023511.2-201ENST00000618803 211 ntBASIC12.52□□□□□ -0.4
APOBP04114 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
APOBP04114 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
APOBP04114 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
APOBP04114 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
APOBP04114 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
APOBP04114 SPDYE15P-201ENST00000424157 909 ntBASIC12.52□□□□□ -0.41
APOBP04114 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
APOBP04114 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
APOBP04114 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
APOBP04114 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
APOBP04114 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
APOBP04114 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC12.52□□□□□ -0.41
APOBP04114 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
APOBP04114 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
APOBP04114 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC12.52□□□□□ -0.41
APOBP04114 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
APOBP04114 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC12.52□□□□□ -0.41
APOBP04114 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC12.52□□□□□ -0.41
APOBP04114 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC12.52□□□□□ -0.41
APOBP04114 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC12.52□□□□□ -0.41
APOBP04114 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
APOBP04114 IER3-202ENST00000376377 1350 ntBASIC12.52□□□□□ -0.41
APOBP04114 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC12.51□□□□□ -0.41
APOBP04114 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
APOBP04114 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
APOBP04114 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC12.51□□□□□ -0.41
APOBP04114 PCED1CP-201ENST00000419887 785 ntBASIC12.51□□□□□ -0.41
APOBP04114 FDX1P1-201ENST00000449115 551 ntBASIC12.51□□□□□ -0.41
APOBP04114 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC12.51□□□□□ -0.41
APOBP04114 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
APOBP04114 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
APOBP04114 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC12.51□□□□□ -0.41
APOBP04114 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
APOBP04114 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
APOBP04114 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
APOBP04114 LINC01238-205ENST00000567549 1107 ntBASIC12.51□□□□□ -0.41
APOBP04114 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms