Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.55■□□□□ 0.72
SDC3O75056 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.55■□□□□ 0.72
SDC3O75056 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.55■□□□□ 0.72
SDC3O75056 AC097493.4-201ENST00000641197 219 ntBASIC19.55■□□□□ 0.72
SDC3O75056 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SDC3O75056 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.55■□□□□ 0.72
SDC3O75056 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SDC3O75056 LINC00565-201ENST00000562710 2331 ntBASIC19.54■□□□□ 0.72
SDC3O75056 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.54■□□□□ 0.72
SDC3O75056 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
SDC3O75056 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SDC3O75056 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.54■□□□□ 0.72
SDC3O75056 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.54■□□□□ 0.72
SDC3O75056 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.54■□□□□ 0.72
SDC3O75056 MMP23A-201ENST00000234610 1017 ntBASIC19.54■□□□□ 0.72
SDC3O75056 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SDC3O75056 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.54■□□□□ 0.72
SDC3O75056 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SDC3O75056 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SDC3O75056 RCN1P1-201ENST00000400413 996 ntBASIC19.54■□□□□ 0.72
SDC3O75056 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SDC3O75056 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.54■□□□□ 0.72
SDC3O75056 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.54■□□□□ 0.72
SDC3O75056 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.54■□□□□ 0.72
SDC3O75056 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.54■□□□□ 0.72
SDC3O75056 AC073195.1-201ENST00000607241 877 ntBASIC19.54■□□□□ 0.72
SDC3O75056 AC012306.2-201ENST00000609350 630 ntBASIC19.54■□□□□ 0.72
SDC3O75056 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SDC3O75056 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
SDC3O75056 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
SDC3O75056 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SDC3O75056 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SDC3O75056 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SDC3O75056 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.54■□□□□ 0.72
SDC3O75056 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SDC3O75056 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.54■□□□□ 0.72
SDC3O75056 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SDC3O75056 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SDC3O75056 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.53■□□□□ 0.72
SDC3O75056 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SDC3O75056 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SDC3O75056 KRT8P20-201ENST00000423953 1409 ntBASIC19.53■□□□□ 0.72
SDC3O75056 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SDC3O75056 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SDC3O75056 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.53■□□□□ 0.72
SDC3O75056 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SDC3O75056 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SDC3O75056 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SDC3O75056 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.53■□□□□ 0.72
SDC3O75056 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.53■□□□□ 0.72
SDC3O75056 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.53■□□□□ 0.72
SDC3O75056 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.53■□□□□ 0.72
SDC3O75056 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SDC3O75056 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SDC3O75056 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SDC3O75056 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
SDC3O75056 FP700111.2-201ENST00000619190 1892 ntBASIC19.52■□□□□ 0.72
SDC3O75056 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.52■□□□□ 0.72
SDC3O75056 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
SDC3O75056 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SDC3O75056 AL031963.3-201ENST00000606441 850 ntBASIC19.52■□□□□ 0.72
SDC3O75056 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SDC3O75056 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SDC3O75056 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
SDC3O75056 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
SDC3O75056 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SDC3O75056 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SDC3O75056 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SDC3O75056 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SDC3O75056 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SDC3O75056 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
SDC3O75056 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SDC3O75056 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
SDC3O75056 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SDC3O75056 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SDC3O75056 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SDC3O75056 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.51■□□□□ 0.71
SDC3O75056 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SDC3O75056 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.51■□□□□ 0.71
SDC3O75056 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
SDC3O75056 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.51■□□□□ 0.71
SDC3O75056 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SDC3O75056 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SDC3O75056 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SDC3O75056 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.5■□□□□ 0.71
SDC3O75056 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
SDC3O75056 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SDC3O75056 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.5■□□□□ 0.71
SDC3O75056 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SDC3O75056 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.5■□□□□ 0.71
SDC3O75056 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SDC3O75056 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.5■□□□□ 0.71
SDC3O75056 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.5■□□□□ 0.71
SDC3O75056 AP000525.1-201ENST00000608286 694 ntBASIC19.5■□□□□ 0.71
SDC3O75056 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SDC3O75056 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.5■□□□□ 0.71
SDC3O75056 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.5■□□□□ 0.71
SDC3O75056 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SDC3O75056 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.49■□□□□ 0.71
SDC3O75056 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms