Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 GAS2L1P2-201ENST00000436355 1356 ntBASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 MCRIP2P1-201ENST00000394346 511 ntBASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
TRAV3A0A0B4J244 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 KRT8P17-201ENST00000453110 1448 ntBASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 AC093484.2-201ENST00000580996 2166 ntBASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 AC016769.1-201ENST00000409132 1010 ntBASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC16.02■□□□□ 0.16
TRAV3A0A0B4J244 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
TRAV3A0A0B4J244 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRAV3A0A0B4J244 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.15
TRAV3A0A0B4J244 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
TRAV3A0A0B4J244 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC16.02■□□□□ 0.15
TRAV3A0A0B4J244 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRAV3A0A0B4J244 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 AL355472.2-201ENST00000422958 438 ntBASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 AC098818.2-201ENST00000564925 2320 ntBASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV3A0A0B4J244 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms