Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
FOXA2Q9Y261 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC20.92■□□□□ 0.94
FOXA2Q9Y261 DRD5P2-201ENST00000421395 2012 ntBASIC20.92■□□□□ 0.94
FOXA2Q9Y261 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.91■□□□□ 0.94
FOXA2Q9Y261 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
FOXA2Q9Y261 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
FOXA2Q9Y261 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
FOXA2Q9Y261 AP006261.1-201ENST00000584783 668 ntBASIC20.9■□□□□ 0.94
FOXA2Q9Y261 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
FOXA2Q9Y261 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
FOXA2Q9Y261 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
FOXA2Q9Y261 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.94
FOXA2Q9Y261 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
FOXA2Q9Y261 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
FOXA2Q9Y261 AC005559.1-201ENST00000589661 871 ntBASIC20.89■□□□□ 0.93
FOXA2Q9Y261 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
FOXA2Q9Y261 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
FOXA2Q9Y261 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
FOXA2Q9Y261 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
FOXA2Q9Y261 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
FOXA2Q9Y261 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
FOXA2Q9Y261 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
FOXA2Q9Y261 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC20.86■□□□□ 0.93
FOXA2Q9Y261 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC20.85■□□□□ 0.93
FOXA2Q9Y261 MIR3665-201ENST00000578708 105 ntBASIC20.85■□□□□ 0.93
FOXA2Q9Y261 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC20.85■□□□□ 0.93
FOXA2Q9Y261 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC20.85■□□□□ 0.93
FOXA2Q9Y261 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
FOXA2Q9Y261 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
FOXA2Q9Y261 RPS2-209ENST00000529806 993 ntTSL 3 BASIC20.84■□□□□ 0.93
FOXA2Q9Y261 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
FOXA2Q9Y261 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
FOXA2Q9Y261 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC20.83■□□□□ 0.93
FOXA2Q9Y261 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.83■□□□□ 0.92
FOXA2Q9Y261 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC20.82■□□□□ 0.92
FOXA2Q9Y261 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC20.82■□□□□ 0.92
FOXA2Q9Y261 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXA2Q9Y261 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXA2Q9Y261 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC20.81■□□□□ 0.92
FOXA2Q9Y261 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXA2Q9Y261 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXA2Q9Y261 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXA2Q9Y261 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXA2Q9Y261 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
FOXA2Q9Y261 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXA2Q9Y261 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.8■□□□□ 0.92
FOXA2Q9Y261 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
FOXA2Q9Y261 DUX4L28-201ENST00000623687 678 ntBASIC20.79■□□□□ 0.92
FOXA2Q9Y261 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
FOXA2Q9Y261 AP004833.2-201ENST00000532228 1454 ntBASIC20.79■□□□□ 0.92
FOXA2Q9Y261 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA2Q9Y261 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA2Q9Y261 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA2Q9Y261 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA2Q9Y261 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA2Q9Y261 AL162393.1-201ENST00000437852 946 ntBASIC20.78■□□□□ 0.92
FOXA2Q9Y261 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA2Q9Y261 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
FOXA2Q9Y261 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.77■□□□□ 0.92
FOXA2Q9Y261 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC20.77■□□□□ 0.92
FOXA2Q9Y261 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXA2Q9Y261 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
FOXA2Q9Y261 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
FOXA2Q9Y261 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC20.76■□□□□ 0.91
FOXA2Q9Y261 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
FOXA2Q9Y261 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
FOXA2Q9Y261 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.76■□□□□ 0.91
FOXA2Q9Y261 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
FOXA2Q9Y261 NRG1-221ENST00000614767 762 ntTSL 5 BASIC20.75■□□□□ 0.91
FOXA2Q9Y261 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
FOXA2Q9Y261 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
FOXA2Q9Y261 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXA2Q9Y261 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXA2Q9Y261 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXA2Q9Y261 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
FOXA2Q9Y261 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
FOXA2Q9Y261 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
FOXA2Q9Y261 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
FOXA2Q9Y261 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA2Q9Y261 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA2Q9Y261 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC20.72■□□□□ 0.91
FOXA2Q9Y261 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA2Q9Y261 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA2Q9Y261 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA2Q9Y261 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA2Q9Y261 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA2Q9Y261 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA2Q9Y261 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA2Q9Y261 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA2Q9Y261 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.71■□□□□ 0.91
FOXA2Q9Y261 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA2Q9Y261 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC20.71■□□□□ 0.91
FOXA2Q9Y261 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA2Q9Y261 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA2Q9Y261 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA2Q9Y261 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA2Q9Y261 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
FOXA2Q9Y261 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
FOXA2Q9Y261 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.7■□□□□ 0.9
FOXA2Q9Y261 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms