Protein–RNA interactions for Protein: Q9NP99

TREM1, Triggering receptor expressed on myeloid cells 1, humanhuman

Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREM1Q9NP99 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.06■□□□□ 0.96
TREM1Q9NP99 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TREM1Q9NP99 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC21.06■□□□□ 0.96
TREM1Q9NP99 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
TREM1Q9NP99 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TREM1Q9NP99 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC21.05■□□□□ 0.96
TREM1Q9NP99 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TREM1Q9NP99 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
TREM1Q9NP99 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
TREM1Q9NP99 DRD5P2-201ENST00000421395 2012 ntBASIC21.04■□□□□ 0.96
TREM1Q9NP99 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TREM1Q9NP99 AL449106.1-201ENST00000608517 1980 ntBASIC21.04■□□□□ 0.96
TREM1Q9NP99 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TREM1Q9NP99 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
TREM1Q9NP99 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
TREM1Q9NP99 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.02■□□□□ 0.96
TREM1Q9NP99 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
TREM1Q9NP99 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.02■□□□□ 0.96
TREM1Q9NP99 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TREM1Q9NP99 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
TREM1Q9NP99 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.02■□□□□ 0.95
TREM1Q9NP99 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TREM1Q9NP99 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TREM1Q9NP99 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TREM1Q9NP99 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TREM1Q9NP99 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TREM1Q9NP99 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
TREM1Q9NP99 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TREM1Q9NP99 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TREM1Q9NP99 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
TREM1Q9NP99 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TREM1Q9NP99 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TREM1Q9NP99 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC20.99■□□□□ 0.95
TREM1Q9NP99 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TREM1Q9NP99 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TREM1Q9NP99 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TREM1Q9NP99 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC20.96■□□□□ 0.95
TREM1Q9NP99 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TREM1Q9NP99 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TREM1Q9NP99 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TREM1Q9NP99 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TREM1Q9NP99 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
TREM1Q9NP99 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC20.95■□□□□ 0.94
TREM1Q9NP99 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TREM1Q9NP99 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
TREM1Q9NP99 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TREM1Q9NP99 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TREM1Q9NP99 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
TREM1Q9NP99 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TREM1Q9NP99 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.92■□□□□ 0.94
TREM1Q9NP99 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TREM1Q9NP99 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TREM1Q9NP99 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TREM1Q9NP99 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.9■□□□□ 0.94
TREM1Q9NP99 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TREM1Q9NP99 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.9■□□□□ 0.94
TREM1Q9NP99 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.9■□□□□ 0.94
TREM1Q9NP99 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
TREM1Q9NP99 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
TREM1Q9NP99 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TREM1Q9NP99 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TREM1Q9NP99 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.89■□□□□ 0.93
TREM1Q9NP99 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
TREM1Q9NP99 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TREM1Q9NP99 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TREM1Q9NP99 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TREM1Q9NP99 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
TREM1Q9NP99 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TREM1Q9NP99 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.87■□□□□ 0.93
TREM1Q9NP99 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC20.86■□□□□ 0.93
TREM1Q9NP99 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.86■□□□□ 0.93
TREM1Q9NP99 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TREM1Q9NP99 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC20.86■□□□□ 0.93
TREM1Q9NP99 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TREM1Q9NP99 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TREM1Q9NP99 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TREM1Q9NP99 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TREM1Q9NP99 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.84■□□□□ 0.93
TREM1Q9NP99 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.84■□□□□ 0.93
TREM1Q9NP99 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TREM1Q9NP99 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TREM1Q9NP99 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TREM1Q9NP99 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.83■□□□□ 0.93
TREM1Q9NP99 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
TREM1Q9NP99 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
TREM1Q9NP99 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.82■□□□□ 0.92
TREM1Q9NP99 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TREM1Q9NP99 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
TREM1Q9NP99 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TREM1Q9NP99 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TREM1Q9NP99 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
TREM1Q9NP99 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.81■□□□□ 0.92
TREM1Q9NP99 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TREM1Q9NP99 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
TREM1Q9NP99 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
TREM1Q9NP99 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.8■□□□□ 0.92
TREM1Q9NP99 AL139393.2-201ENST00000608721 2025 ntBASIC20.8■□□□□ 0.92
TREM1Q9NP99 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TREM1Q9NP99 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TREM1Q9NP99 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms