Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC20.8■□□□□ 0.92
CDX1P47902 AC044849.2-201ENST00000606596 710 ntBASIC20.8■□□□□ 0.92
CDX1P47902 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC20.8■□□□□ 0.92
CDX1P47902 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC20.8■□□□□ 0.92
CDX1P47902 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDX1P47902 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDX1P47902 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CDX1P47902 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.79■□□□□ 0.92
CDX1P47902 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDX1P47902 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CDX1P47902 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDX1P47902 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CDX1P47902 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDX1P47902 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
CDX1P47902 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDX1P47902 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CDX1P47902 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.76■□□□□ 0.91
CDX1P47902 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDX1P47902 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDX1P47902 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDX1P47902 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDX1P47902 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CDX1P47902 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDX1P47902 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDX1P47902 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDX1P47902 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDX1P47902 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDX1P47902 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDX1P47902 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CDX1P47902 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDX1P47902 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC20.74■□□□□ 0.91
CDX1P47902 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDX1P47902 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CDX1P47902 AC142086.6-201ENST00000621154 1765 ntBASIC20.73■□□□□ 0.91
CDX1P47902 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDX1P47902 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CDX1P47902 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
CDX1P47902 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC20.72■□□□□ 0.91
CDX1P47902 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CDX1P47902 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CDX1P47902 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDX1P47902 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDX1P47902 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.91
CDX1P47902 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.7■□□□□ 0.9
CDX1P47902 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC20.7■□□□□ 0.9
CDX1P47902 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC20.7■□□□□ 0.9
CDX1P47902 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC20.7■□□□□ 0.9
CDX1P47902 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CDX1P47902 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC20.69■□□□□ 0.9
CDX1P47902 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CDX1P47902 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CDX1P47902 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC20.68■□□□□ 0.9
CDX1P47902 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDX1P47902 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDX1P47902 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDX1P47902 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDX1P47902 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDX1P47902 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.67■□□□□ 0.9
CDX1P47902 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDX1P47902 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDX1P47902 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDX1P47902 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDX1P47902 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CDX1P47902 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CDX1P47902 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDX1P47902 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC20.66■□□□□ 0.9
CDX1P47902 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDX1P47902 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.65■□□□□ 0.9
CDX1P47902 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDX1P47902 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDX1P47902 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC20.64■□□□□ 0.89
CDX1P47902 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC20.64■□□□□ 0.89
CDX1P47902 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC20.64■□□□□ 0.89
CDX1P47902 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDX1P47902 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDX1P47902 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
CDX1P47902 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDX1P47902 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDX1P47902 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.63■□□□□ 0.89
CDX1P47902 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CDX1P47902 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.63■□□□□ 0.89
CDX1P47902 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDX1P47902 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
CDX1P47902 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CDX1P47902 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.63■□□□□ 0.89
CDX1P47902 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDX1P47902 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.62■□□□□ 0.89
CDX1P47902 AL121749.1-202ENST00000609313 2153 ntBASIC20.62■□□□□ 0.89
CDX1P47902 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC20.62■□□□□ 0.89
CDX1P47902 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDX1P47902 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDX1P47902 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDX1P47902 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CDX1P47902 AC108673.1-201ENST00000510422 1159 ntBASIC20.6■□□□□ 0.89
CDX1P47902 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CDX1P47902 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDX1P47902 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CDX1P47902 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
CDX1P47902 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.59■□□□□ 0.89
CDX1P47902 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms