Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
NPHP1O15259 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC32.97■■■□□ 2.87
NPHP1O15259 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
NPHP1O15259 AL161658.1-201ENST00000623641 1967 ntBASIC32.96■■■□□ 2.87
NPHP1O15259 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
NPHP1O15259 GPX1-201ENST00000419349 1106 ntBASIC32.95■■■□□ 2.87
NPHP1O15259 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC32.95■■■□□ 2.87
NPHP1O15259 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC32.94■■■□□ 2.86
NPHP1O15259 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC32.94■■■□□ 2.86
NPHP1O15259 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC32.93■■■□□ 2.86
NPHP1O15259 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
NPHP1O15259 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
NPHP1O15259 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
NPHP1O15259 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
NPHP1O15259 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
NPHP1O15259 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC32.92■■■□□ 2.86
NPHP1O15259 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC32.92■■■□□ 2.86
NPHP1O15259 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
NPHP1O15259 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC32.91■■■□□ 2.86
NPHP1O15259 ABHD17AP5-201ENST00000580133 923 ntBASIC32.91■■■□□ 2.86
NPHP1O15259 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC32.91■■■□□ 2.86
NPHP1O15259 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
NPHP1O15259 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC32.91■■■□□ 2.86
NPHP1O15259 CEP120-209ENST00000515110 606 ntTSL 3 BASIC32.9■■■□□ 2.86
NPHP1O15259 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
NPHP1O15259 LINC00273-201ENST00000539813 1452 ntBASIC32.88■■■□□ 2.85
NPHP1O15259 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC32.88■■■□□ 2.85
NPHP1O15259 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC32.87■■■□□ 2.85
NPHP1O15259 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC32.87■■■□□ 2.85
NPHP1O15259 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
NPHP1O15259 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC32.84■■■□□ 2.85
NPHP1O15259 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC32.84■■■□□ 2.85
NPHP1O15259 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC32.83■■■□□ 2.85
NPHP1O15259 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC32.82■■■□□ 2.84
NPHP1O15259 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC32.81■■■□□ 2.84
NPHP1O15259 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
NPHP1O15259 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC32.81■■■□□ 2.84
NPHP1O15259 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
NPHP1O15259 RNF126P1-201ENST00000567452 1320 ntBASIC32.8■■■□□ 2.84
NPHP1O15259 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
NPHP1O15259 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC32.8■■■□□ 2.84
NPHP1O15259 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
NPHP1O15259 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
NPHP1O15259 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC32.79■■■□□ 2.84
NPHP1O15259 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
NPHP1O15259 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
NPHP1O15259 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
NPHP1O15259 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
NPHP1O15259 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
NPHP1O15259 AC010864.1-201ENST00000609407 1511 ntBASIC32.78■■■□□ 2.84
NPHP1O15259 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC32.78■■■□□ 2.84
NPHP1O15259 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC32.78■■■□□ 2.84
NPHP1O15259 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
NPHP1O15259 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC32.77■■■□□ 2.84
NPHP1O15259 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC32.76■■■□□ 2.83
NPHP1O15259 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC32.74■■■□□ 2.83
NPHP1O15259 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
NPHP1O15259 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC32.74■■■□□ 2.83
NPHP1O15259 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC32.74■■■□□ 2.83
NPHP1O15259 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC32.74■■■□□ 2.83
NPHP1O15259 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
NPHP1O15259 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
NPHP1O15259 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
NPHP1O15259 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC32.71■■■□□ 2.83
NPHP1O15259 AC022413.1-201ENST00000624602 984 ntBASIC32.71■■■□□ 2.83
NPHP1O15259 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC32.71■■■□□ 2.83
NPHP1O15259 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
NPHP1O15259 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC32.69■■■□□ 2.82
NPHP1O15259 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
NPHP1O15259 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
NPHP1O15259 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
NPHP1O15259 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC32.67■■■□□ 2.82
NPHP1O15259 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
NPHP1O15259 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC32.67■■■□□ 2.82
NPHP1O15259 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC32.67■■■□□ 2.82
NPHP1O15259 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
NPHP1O15259 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC32.65■■■□□ 2.82
NPHP1O15259 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC32.65■■■□□ 2.82
NPHP1O15259 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC32.64■■■□□ 2.82
NPHP1O15259 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC32.64■■■□□ 2.82
NPHP1O15259 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
NPHP1O15259 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC32.63■■■□□ 2.81
NPHP1O15259 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC32.62■■■□□ 2.81
NPHP1O15259 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC32.62■■■□□ 2.81
NPHP1O15259 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
NPHP1O15259 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC32.61■■■□□ 2.81
NPHP1O15259 AC008813.1-201ENST00000536597 885 ntBASIC32.61■■■□□ 2.81
NPHP1O15259 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
NPHP1O15259 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
NPHP1O15259 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
NPHP1O15259 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
NPHP1O15259 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
NPHP1O15259 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC32.59■■■□□ 2.81
NPHP1O15259 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
NPHP1O15259 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC32.59■■■□□ 2.81
NPHP1O15259 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
NPHP1O15259 HES4-202ENST00000428771 1040 ntTSL 2 BASIC32.58■■■□□ 2.81
NPHP1O15259 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC32.58■■■□□ 2.81
NPHP1O15259 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
NPHP1O15259 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms