Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LINC01360-203ENST00000440762 3871 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL5A1P20908 EIF3F-208ENST00000533626 7540 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
COL5A1P20908 ZNF10-201ENST00000248211 4441 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL5A1P20908 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL5A1P20908 TNC-202ENST00000350763 7641 ntAPPRIS P2 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL5A1P20908 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
COL5A1P20908 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL5A1P20908 AC007091.1-201ENST00000412563 566 ntTSL 5 BASIC6.61□□□□□ -1.35
COL5A1P20908 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC6.61□□□□□ -1.35
COL5A1P20908 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL5A1P20908 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC6.61□□□□□ -1.35
COL5A1P20908 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL5A1P20908 AL050331.2-201ENST00000457319 421 ntTSL 3 BASIC6.61□□□□□ -1.35
COL5A1P20908 AC083806.1-201ENST00000468934 316 ntBASIC6.61□□□□□ -1.35
COL5A1P20908 RN7SL216P-201ENST00000471607 298 ntBASIC6.61□□□□□ -1.35
COL5A1P20908 RN7SL413P-201ENST00000482700 297 ntBASIC6.61□□□□□ -1.35
COL5A1P20908 RPS4XP23-201ENST00000487801 237 ntBASIC6.61□□□□□ -1.35
COL5A1P20908 SNRPCP6-201ENST00000528310 210 ntBASIC6.61□□□□□ -1.35
COL5A1P20908 AL445383.1-201ENST00000554689 874 ntBASIC6.61□□□□□ -1.35
COL5A1P20908 SNORA70D-201ENST00000578836 135 ntBASIC6.61□□□□□ -1.35
COL5A1P20908 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC6.61□□□□□ -1.35
COL5A1P20908 AC025262.3-201ENST00000623666 360 ntBASIC6.61□□□□□ -1.35
COL5A1P20908 NAPEPLD-209ENST00000465647 2380 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL5A1P20908 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC6.61□□□□□ -1.35
COL5A1P20908 CCNB3-204ENST00000376042 4693 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
COL5A1P20908 TBC1D30-204ENST00000542120 7433 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL5A1P20908 MECOM-208ENST00000468789 3691 ntAPPRIS P3 TSL 2 BASIC6.61□□□□□ -1.35
COL5A1P20908 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL5A1P20908 TMEM230-204ENST00000379277 1536 ntAPPRIS P1 TSL 3 BASIC6.61□□□□□ -1.35
COL5A1P20908 PHACTR1-205ENST00000379350 4784 ntTSL 2 BASIC6.61□□□□□ -1.35
COL5A1P20908 AC090771.1-201ENST00000585803 1618 ntBASIC6.61□□□□□ -1.35
COL5A1P20908 OR7E122P-202ENST00000641144 6171 ntBASIC6.61□□□□□ -1.35
COL5A1P20908 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A1P20908 HCG18-244ENST00000602516 2890 ntBASIC6.6□□□□□ -1.35
COL5A1P20908 MRPS6P2-201ENST00000381143 370 ntBASIC6.6□□□□□ -1.35
COL5A1P20908 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A1P20908 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A1P20908 AL713923.1-201ENST00000414071 378 ntTSL 5 BASIC6.6□□□□□ -1.35
COL5A1P20908 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC6.6□□□□□ -1.35
COL5A1P20908 FTH1P10-202ENST00000430907 550 ntBASIC6.6□□□□□ -1.35
COL5A1P20908 SDHCP3-201ENST00000445371 506 ntBASIC6.6□□□□□ -1.35
COL5A1P20908 HSD3BP3-201ENST00000514706 994 ntBASIC6.6□□□□□ -1.35
COL5A1P20908 SCARNA21.2-201ENST00000516600 166 ntBASIC6.6□□□□□ -1.35
COL5A1P20908 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC6.6□□□□□ -1.35
COL5A1P20908 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
COL5A1P20908 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC6.6□□□□□ -1.35
COL5A1P20908 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC6.6□□□□□ -1.35
COL5A1P20908 ANP32BP1-202ENST00000568553 737 ntBASIC6.6□□□□□ -1.35
COL5A1P20908 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC6.6□□□□□ -1.35
COL5A1P20908 AL157778.1-201ENST00000626665 729 ntTSL 3 BASIC6.6□□□□□ -1.35
COL5A1P20908 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC6.6□□□□□ -1.35
COL5A1P20908 CREM-208ENST00000361599 2170 ntTSL 5 BASIC6.6□□□□□ -1.35
COL5A1P20908 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A1P20908 NPL-201ENST00000258317 2461 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A1P20908 ADAM3A-207ENST00000490268 2627 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A1P20908 PAX6-209ENST00000419022 6888 ntAPPRIS P4 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A1P20908 CDC73-204ENST00000635846 3987 ntTSL 5 BASIC6.6□□□□□ -1.35
COL5A1P20908 SZT2-210ENST00000634258 11045 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
COL5A1P20908 EPB41L2-228ENST00000531410 2926 ntTSL 5 BASIC6.6□□□□□ -1.35
COL5A1P20908 AC114776.1-201ENST00000414159 4395 ntTSL 5 BASIC6.6□□□□□ -1.35
COL5A1P20908 AC009948.5-201ENST00000624360 4406 ntBASIC6.6□□□□□ -1.35
COL5A1P20908 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
COL5A1P20908 SLC8A3-208ENST00000533541 3409 ntTSL 2 BASIC6.6□□□□□ -1.35
COL5A1P20908 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A1P20908 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC6.6□□□□□ -1.35
COL5A1P20908 MKL2-205ENST00000572567 2185 ntTSL 2 BASIC6.6□□□□□ -1.35
COL5A1P20908 AL355306.2-202ENST00000634380 2281 ntTSL 5 BASIC6.6□□□□□ -1.35
COL5A1P20908 ZNF540-206ENST00000589117 2349 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A1P20908 EXOC4-201ENST00000253861 4185 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A1P20908 ALPK1-201ENST00000177648 4537 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A1P20908 KLHL3-209ENST00000508657 6981 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A1P20908 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A1P20908 LIMCH1-216ENST00000512820 5071 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A1P20908 BRINP3-201ENST00000367462 3142 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A1P20908 HDAC9-201ENST00000401921 3254 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A1P20908 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A1P20908 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC6.6□□□□□ -1.35
COL5A1P20908 AC007679.3-201ENST00000434035 414 ntBASIC6.6□□□□□ -1.35
COL5A1P20908 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC6.6□□□□□ -1.35
COL5A1P20908 RPS27P20-201ENST00000492051 246 ntBASIC6.6□□□□□ -1.35
COL5A1P20908 AC091874.2-201ENST00000505889 720 ntBASIC6.6□□□□□ -1.35
COL5A1P20908 AC146944.3-201ENST00000509969 371 ntBASIC6.6□□□□□ -1.35
COL5A1P20908 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC6.6□□□□□ -1.35
COL5A1P20908 AC022973.4-201ENST00000524100 917 ntTSL 2 BASIC6.6□□□□□ -1.35
COL5A1P20908 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC6.6□□□□□ -1.35
COL5A1P20908 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC6.6□□□□□ -1.35
COL5A1P20908 MYL2-203ENST00000548438 664 ntTSL 3 BASIC6.6□□□□□ -1.35
COL5A1P20908 KCNMA1-AS1-204ENST00000595702 504 ntTSL 5 BASIC6.6□□□□□ -1.35
COL5A1P20908 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC6.6□□□□□ -1.35
COL5A1P20908 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC6.6□□□□□ -1.35
COL5A1P20908 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC6.6□□□□□ -1.35
COL5A1P20908 AC120057.5-201ENST00000623840 154 ntBASIC6.6□□□□□ -1.35
COL5A1P20908 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC6.6□□□□□ -1.35
COL5A1P20908 PSG6-201ENST00000187910 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL5A1P20908 NBPF9-202ENST00000584027 5034 ntAPPRIS P2 TSL 5 BASIC6.59□□□□□ -1.35
COL5A1P20908 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC6.59□□□□□ -1.35
COL5A1P20908 IPO7P2-201ENST00000451446 1750 ntBASIC6.59□□□□□ -1.35
COL5A1P20908 NDRG3-203ENST00000373773 2098 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL5A1P20908 RIPOR2-207ENST00000540914 3614 ntTSL 2 BASIC6.59□□□□□ -1.35
COL5A1P20908 CCDC150-201ENST00000389175 3685 ntAPPRIS P2 TSL 5 BASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms