Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RPL23A-203ENST00000394938 688 ntTSL 2 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 RPL5P35-201ENST00000398869 816 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 DNAJC19P6-201ENST00000401853 280 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AP001042.1-201ENST00000416842 487 ntTSL 3 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 VPS26BP1-201ENST00000417155 755 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC015987.1-201ENST00000419211 804 ntTSL 2 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 MTCO2P21-201ENST00000419780 677 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AL590714.1-201ENST00000420498 379 ntTSL 3 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC005005.2-201ENST00000420779 380 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 BRWD1-AS1-201ENST00000423274 691 ntTSL 4 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC104076.1-201ENST00000428080 265 ntTSL 3 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 MTCO2P20-201ENST00000437339 673 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 OR10R1P-201ENST00000441524 1141 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AL161937.1-202ENST00000451960 341 ntTSL 3 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 RPL7P45-201ENST00000455851 743 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 RN7SL89P-201ENST00000480252 283 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC127024.1-201ENST00000490847 418 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC079921.2-201ENST00000507579 455 ntTSL 3 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC117422.1-201ENST00000508263 379 ntTSL 3 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 LINC00967-204ENST00000518412 271 ntTSL 5 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC025437.1-201ENST00000523820 346 ntTSL 2 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 UBTFL10-201ENST00000528532 562 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC069360.1-202ENST00000533941 557 ntTSL 3 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 MRPL40P1-201ENST00000542687 604 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 THAP2-202ENST00000547843 672 ntTSL 2 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 ACP5-208ENST00000590420 301 ntTSL 5 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC245036.5-201ENST00000596330 847 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 MILR1-202ENST00000612535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 RNVU1-19-201ENST00000613023 167 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 OR8G7P-201ENST00000616658 848 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AP004607.9-201ENST00000618202 316 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AL355493.4-201ENST00000618530 292 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 CTXN3-204ENST00000620385 1208 ntAPPRIS P1 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC011330.2-201ENST00000621680 635 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 NPEPPS-215ENST00000530173 2864 ntTSL 2 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 C1GALT1-201ENST00000223122 6078 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 RPS17-209ENST00000561157 1909 ntTSL 2 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 EBF1-203ENST00000517373 2277 ntTSL 5 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AL355578.1-201ENST00000607405 1328 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AKAP3-206ENST00000545990 3318 ntAPPRIS P1 TSL 2 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 CLOCK-202ENST00000381322 4059 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 RBM5-AS1-201ENST00000630404 1386 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 CD40LG-201ENST00000370628 1720 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC110998.1-201ENST00000519029 2053 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 DNAH9-215ENST00000608377 3147 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 TTC23-202ENST00000394129 2505 ntAPPRIS ALT2 TSL 2 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 MXI1-203ENST00000361248 2188 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AC139491.2-201ENST00000515403 3632 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 MECOM-208ENST00000468789 3691 ntAPPRIS P3 TSL 2 BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 KIF1B-201ENST00000263934 6816 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 TMED8-201ENST00000216468 7784 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 AC022306.1-201ENST00000560489 1562 ntBASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 AP4S1-211ENST00000616371 4595 ntAPPRIS P1 TSL 2 BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 GART-201ENST00000361093 2149 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 RN7SKP1-201ENST00000365525 307 ntBASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 PPCS-201ENST00000372556 984 ntTSL 2 BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 DYNLT3-202ENST00000378581 920 ntTSL 2 BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 MT-TP-201ENST00000387461 68 ntBASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 SEC61G-202ENST00000395535 459 ntAPPRIS P1 TSL 2 BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 AL449283.1-202ENST00000418249 604 ntBASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 AC007966.1-201ENST00000421998 1179 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 RPL5P2-201ENST00000429598 854 ntBASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 ZNF138-205ENST00000440155 1066 ntAPPRIS P3 TSL 2 BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 AC140479.1-201ENST00000440423 337 ntBASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 AC023050.1-201ENST00000498198 304 ntBASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 RPL41-202ENST00000501597 469 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 SUMO2P4-201ENST00000504193 276 ntBASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 CDH12P2-201ENST00000504393 298 ntBASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 MGST2-204ENST00000506797 634 ntTSL 2 BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 AC090568.2-203ENST00000521433 579 ntTSL 4 BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 CLEC7A-208ENST00000525605 573 ntTSL 4 BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 AP000880.1-201ENST00000529416 743 ntTSL 3 BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 CCDC32-203ENST00000558113 576 ntTSL 3 BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 CCDC32-210ENST00000559911 677 ntTSL 5 BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 BMS1P8-201ENST00000565049 1178 ntBASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 PDCD6IPP2-205ENST00000565892 498 ntTSL 2 BASIC8.7□□□□□ -1.02
TRAIPQ9BWF2 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC8.7□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms