Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 BX005040.2-201ENST00000620504 370 ntBASIC6.95□□□□□ -1.3
VMP1Q96GC9 AL353747.4-202ENST00000625787 674 ntTSL 3 BASIC6.95□□□□□ -1.3
VMP1Q96GC9 SNORA43.5-201ENST00000631270 138 ntBASIC6.95□□□□□ -1.3
VMP1Q96GC9 FGL2-202ENST00000637771 989 ntBASIC6.95□□□□□ -1.3
VMP1Q96GC9 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC6.95□□□□□ -1.3
VMP1Q96GC9 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
VMP1Q96GC9 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
VMP1Q96GC9 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC6.95□□□□□ -1.3
VMP1Q96GC9 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.95□□□□□ -1.3
VMP1Q96GC9 TBC1D19-205ENST00000511789 1386 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
VMP1Q96GC9 EEF1A1P22-201ENST00000559385 1380 ntBASIC6.95□□□□□ -1.3
VMP1Q96GC9 CASC19-255ENST00000641733 1385 ntBASIC6.95□□□□□ -1.3
VMP1Q96GC9 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
VMP1Q96GC9 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 FIGNL1-213ENST00000615084 3368 ntAPPRIS P1 TSL 3 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 AC027279.4-201ENST00000624371 2072 ntBASIC6.94□□□□□ -1.3
VMP1Q96GC9 SFR1-201ENST00000369727 1438 ntAPPRIS P4 TSL 2 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 LRRC31-202ENST00000316428 2520 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
VMP1Q96GC9 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC6.94□□□□□ -1.3
VMP1Q96GC9 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
VMP1Q96GC9 ATP10D-203ENST00000504445 2550 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
VMP1Q96GC9 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 BRS3-201ENST00000370648 2833 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
VMP1Q96GC9 CDC73-204ENST00000635846 3987 ntTSL 5 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
VMP1Q96GC9 TCP11X2-202ENST00000453326 1747 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 TCP11X1-201ENST00000597070 1747 ntTSL 2 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
VMP1Q96GC9 OR10A3-201ENST00000360759 1061 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 MIR575-201ENST00000385013 94 ntBASIC6.94□□□□□ -1.3
VMP1Q96GC9 MRPS33-202ENST00000393008 853 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
VMP1Q96GC9 MIR1204-201ENST00000408388 67 ntBASIC6.94□□□□□ -1.3
VMP1Q96GC9 RN7SKP236-201ENST00000410635 284 ntBASIC6.94□□□□□ -1.3
VMP1Q96GC9 SNX18P13-201ENST00000412442 529 ntBASIC6.94□□□□□ -1.3
VMP1Q96GC9 AL161725.1-203ENST00000415004 1081 ntTSL 5 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 EIF4A1P13-201ENST00000415667 230 ntBASIC6.94□□□□□ -1.3
VMP1Q96GC9 AC096570.1-201ENST00000419013 569 ntTSL 4 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 AC009495.3-201ENST00000425688 779 ntTSL 3 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 GAS5-211ENST00000432536 959 ntTSL 2 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 AL357314.1-201ENST00000433521 806 ntTSL 3 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 CDK7P1-201ENST00000434574 693 ntBASIC6.94□□□□□ -1.3
VMP1Q96GC9 AC007365.1-201ENST00000439964 627 ntTSL 2 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 AC092421.1-201ENST00000448148 418 ntBASIC6.94□□□□□ -1.3
VMP1Q96GC9 AC015820.1-201ENST00000473882 321 ntBASIC6.94□□□□□ -1.3
VMP1Q96GC9 RN7SL153P-201ENST00000486501 292 ntBASIC6.94□□□□□ -1.3
VMP1Q96GC9 AC023818.1-201ENST00000498379 384 ntBASIC6.94□□□□□ -1.3
VMP1Q96GC9 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 MTND6P8-201ENST00000503471 522 ntBASIC6.94□□□□□ -1.3
VMP1Q96GC9 RASGRF2-AS1-201ENST00000505107 665 ntTSL 3 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 SETP21-201ENST00000514799 892 ntBASIC6.94□□□□□ -1.3
VMP1Q96GC9 LINC01288-201ENST00000519189 529 ntTSL 4 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 AC103409.1-201ENST00000521199 564 ntTSL 5 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 AP000880.1-202ENST00000526487 588 ntTSL 3 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 AC087257.2-201ENST00000538759 928 ntBASIC6.94□□□□□ -1.3
VMP1Q96GC9 AL136018.1-202ENST00000555300 488 ntTSL 5 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 RBM4-213ENST00000578778 582 ntTSL 4 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 RN7SL835P-201ENST00000579920 262 ntBASIC6.94□□□□□ -1.3
VMP1Q96GC9 AC015923.1-202ENST00000581421 491 ntTSL 2 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 AL669942.1-206ENST00000610473 783 ntTSL 3 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
VMP1Q96GC9 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
VMP1Q96GC9 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 AC091544.5-201ENST00000620192 3815 ntBASIC6.94□□□□□ -1.3
VMP1Q96GC9 AC018628.1-201ENST00000624147 3819 ntBASIC6.94□□□□□ -1.3
VMP1Q96GC9 CXCR4-202ENST00000409817 1895 ntAPPRIS P3 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
VMP1Q96GC9 COPS3-203ENST00000439936 1394 ntTSL 5 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 ARPP21-221ENST00000444190 3182 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
VMP1Q96GC9 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC6.94□□□□□ -1.3
VMP1Q96GC9 PDE11A-212ENST00000358450 3489 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
VMP1Q96GC9 CLCN3-202ENST00000360642 3208 ntTSL 2 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 AC007114.2-201ENST00000576014 4281 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 GPR19-201ENST00000332427 1743 ntAPPRIS P1 TSL 4 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 Z96074.1-203ENST00000637685 1746 ntTSL 5 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 MAPK10-383ENST00000642032 3390 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
VMP1Q96GC9 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 ENO1P4-201ENST00000416471 1785 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 DDX10P2-201ENST00000417796 2614 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 AL442128.2-201ENST00000620246 1824 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 PLGLB2-201ENST00000359481 1173 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
VMP1Q96GC9 RN7SKP36-201ENST00000363997 312 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 AC012451.1-201ENST00000412312 357 ntTSL 3 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 AL583805.2-201ENST00000418571 486 ntTSL 5 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 FTOP1-201ENST00000419363 861 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 RAC1P4-201ENST00000419413 579 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 AC244033.1-201ENST00000426826 870 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 AC245047.1-201ENST00000433276 873 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 ATP5LP4-201ENST00000434169 307 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 AC005040.1-201ENST00000437783 482 ntBASIC6.93□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms