Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL359094.1-211ENST00000608350 335 ntTSL 5 BASIC8.72□□□□□ -1.01
HMGB1P09429 AL356608.1-201ENST00000610034 820 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 AC023310.4-201ENST00000613130 650 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 AC106795.5-201ENST00000623288 454 ntBASIC8.72□□□□□ -1.01
HMGB1P09429 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC8.72□□□□□ -1.01
HMGB1P09429 CTNNA1-201ENST00000302763 3756 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
HMGB1P09429 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC8.72□□□□□ -1.01
HMGB1P09429 C11orf54-207ENST00000528288 4094 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
HMGB1P09429 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC8.72□□□□□ -1.01
HMGB1P09429 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC8.72□□□□□ -1.01
HMGB1P09429 COPS3-203ENST00000439936 1394 ntTSL 5 BASIC8.72□□□□□ -1.01
HMGB1P09429 DIO2-210ENST00000557010 6367 ntAPPRIS P1 TSL 2 BASIC8.72□□□□□ -1.01
HMGB1P09429 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC8.72□□□□□ -1.01
HMGB1P09429 KDELC2-202ENST00000434945 4374 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
HMGB1P09429 AC109361.1-201ENST00000513220 3526 ntTSL 2 BASIC8.71□□□□□ -1.01
HMGB1P09429 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
HMGB1P09429 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC8.71□□□□□ -1.01
HMGB1P09429 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
HMGB1P09429 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC8.71□□□□□ -1.01
HMGB1P09429 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC8.71□□□□□ -1.02
HMGB1P09429 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
HMGB1P09429 KLRG1-202ENST00000356986 1206 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
HMGB1P09429 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
HMGB1P09429 SNORD15A-201ENST00000384214 148 ntBASIC8.71□□□□□ -1.02
HMGB1P09429 RNU6-1263P-201ENST00000384601 106 ntBASIC8.71□□□□□ -1.02
HMGB1P09429 MIR128-2-201ENST00000384893 84 ntBASIC8.71□□□□□ -1.02
HMGB1P09429 IGLJ2-201ENST00000390322 175 ntAPPRIS P1 BASIC8.71□□□□□ -1.02
HMGB1P09429 AL133268.2-201ENST00000416595 430 ntTSL 3 BASIC8.71□□□□□ -1.02
HMGB1P09429 AC117434.1-201ENST00000419971 836 ntBASIC8.71□□□□□ -1.02
HMGB1P09429 Z85994.2-201ENST00000434327 452 ntBASIC8.71□□□□□ -1.02
HMGB1P09429 RBMY2TP-201ENST00000451162 947 ntBASIC8.71□□□□□ -1.02
HMGB1P09429 AC013429.1-201ENST00000456604 422 ntBASIC8.71□□□□□ -1.02
HMGB1P09429 AC093827.1-201ENST00000480094 861 ntBASIC8.71□□□□□ -1.02
HMGB1P09429 PFN2-213ENST00000494827 793 ntTSL 4 BASIC8.71□□□□□ -1.02
HMGB1P09429 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC8.71□□□□□ -1.02
HMGB1P09429 RNU6-319P-201ENST00000516025 108 ntBASIC8.71□□□□□ -1.02
HMGB1P09429 LINC01288-201ENST00000519189 529 ntTSL 4 BASIC8.71□□□□□ -1.02
HMGB1P09429 RPL10P18-201ENST00000519384 309 ntBASIC8.71□□□□□ -1.02
HMGB1P09429 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC8.71□□□□□ -1.02
HMGB1P09429 MYL6-211ENST00000548580 528 ntTSL 2 BASIC8.71□□□□□ -1.02
HMGB1P09429 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC8.71□□□□□ -1.02
HMGB1P09429 LINC00469-203ENST00000579749 583 ntTSL 5 BASIC8.71□□□□□ -1.02
HMGB1P09429 Z93930.3-201ENST00000607919 749 ntBASIC8.71□□□□□ -1.02
HMGB1P09429 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
HMGB1P09429 JAML-206ENST00000526620 1383 ntAPPRIS ALT2 TSL 2 BASIC8.71□□□□□ -1.02
HMGB1P09429 CHIC1-201ENST00000373502 4158 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
HMGB1P09429 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
HMGB1P09429 YES1-201ENST00000314574 4441 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC8.7□□□□□ -1.02
HMGB1P09429 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 BRD7P6-201ENST00000431406 1860 ntBASIC8.7□□□□□ -1.02
HMGB1P09429 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 GTF2E1-201ENST00000283875 3012 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 PDE11A-212ENST00000358450 3489 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 ZNF90-201ENST00000418063 2310 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 SMG1P4-203ENST00000517529 1589 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 CEP41-213ENST00000489512 3161 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 PNN-201ENST00000216832 3576 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 GNE-205ENST00000539815 3657 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC8.7□□□□□ -1.02
HMGB1P09429 LINC02511-201ENST00000505736 1668 ntTSL 5 BASIC8.7□□□□□ -1.02
HMGB1P09429 S100A4-201ENST00000354332 566 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 U3.1-201ENST00000362500 215 ntBASIC8.7□□□□□ -1.02
HMGB1P09429 RNA5SP260-201ENST00000363849 111 ntBASIC8.7□□□□□ -1.02
HMGB1P09429 TRAV6-201ENST00000390428 404 ntAPPRIS P1 BASIC8.7□□□□□ -1.02
HMGB1P09429 CNPY1-202ENST00000406197 560 ntTSL 5 BASIC8.7□□□□□ -1.02
HMGB1P09429 TXNDC9-202ENST00000409434 1111 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 AC009237.9-201ENST00000414800 347 ntBASIC8.7□□□□□ -1.02
HMGB1P09429 GEMIN2P2-201ENST00000418195 715 ntBASIC8.7□□□□□ -1.02
HMGB1P09429 AL390840.1-201ENST00000420303 988 ntBASIC8.7□□□□□ -1.02
HMGB1P09429 AL591846.2-201ENST00000425161 358 ntTSL 2 BASIC8.7□□□□□ -1.02
HMGB1P09429 AL513304.1-201ENST00000432987 359 ntTSL 3 BASIC8.7□□□□□ -1.02
HMGB1P09429 AL731892.1-201ENST00000437364 1192 ntBASIC8.7□□□□□ -1.02
HMGB1P09429 AL157400.2-201ENST00000454174 563 ntTSL 2 BASIC8.7□□□□□ -1.02
HMGB1P09429 AC009269.1-201ENST00000470368 833 ntTSL 3 BASIC8.7□□□□□ -1.02
HMGB1P09429 AC066616.1-201ENST00000486795 413 ntBASIC8.7□□□□□ -1.02
HMGB1P09429 RN7SL516P-201ENST00000496127 297 ntBASIC8.7□□□□□ -1.02
HMGB1P09429 AMTN-202ENST00000504451 761 ntAPPRIS ALT1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC8.7□□□□□ -1.02
HMGB1P09429 AC025524.2-202ENST00000523042 535 ntTSL 4 BASIC8.7□□□□□ -1.02
HMGB1P09429 AC006205.2-201ENST00000538943 373 ntTSL 2 BASIC8.7□□□□□ -1.02
HMGB1P09429 AC138123.2-204ENST00000547432 721 ntTSL 3 BASIC8.7□□□□□ -1.02
HMGB1P09429 AC067735.1-201ENST00000551152 526 ntTSL 2 BASIC8.7□□□□□ -1.02
HMGB1P09429 AC021755.3-201ENST00000560376 864 ntTSL 5 BASIC8.7□□□□□ -1.02
HMGB1P09429 AC009268.1-201ENST00000561352 1203 ntBASIC8.7□□□□□ -1.02
HMGB1P09429 AL023284.3-202ENST00000571188 543 ntTSL 5 BASIC8.7□□□□□ -1.02
HMGB1P09429 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC8.7□□□□□ -1.02
HMGB1P09429 CBLN2-203ENST00000581073 537 ntTSL 4 BASIC8.7□□□□□ -1.02
HMGB1P09429 AC009716.1-201ENST00000583287 398 ntTSL 3 BASIC8.7□□□□□ -1.02
HMGB1P09429 AC009955.2-201ENST00000597288 542 ntBASIC8.7□□□□□ -1.02
HMGB1P09429 AL359745.1-201ENST00000626943 760 ntTSL 5 BASIC8.7□□□□□ -1.02
HMGB1P09429 AL390036.1-203ENST00000635340 894 ntTSL 5 BASIC8.7□□□□□ -1.02
HMGB1P09429 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC8.7□□□□□ -1.02
HMGB1P09429 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC8.7□□□□□ -1.02
HMGB1P09429 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC8.7□□□□□ -1.02
HMGB1P09429 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC8.7□□□□□ -1.02
HMGB1P09429 OR1C1-201ENST00000408896 1307 ntAPPRIS P1 BASIC8.7□□□□□ -1.02
HMGB1P09429 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms