Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.36■□□□□ 0.53
LRFN1Q9P244 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
LRFN1Q9P244 PTBP1P-201ENST00000554374 1601 ntBASIC18.36■□□□□ 0.53
LRFN1Q9P244 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.36■□□□□ 0.53
LRFN1Q9P244 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.36■□□□□ 0.53
LRFN1Q9P244 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LRFN1Q9P244 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LRFN1Q9P244 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
LRFN1Q9P244 AC007225.1-201ENST00000566331 1836 ntBASIC18.35■□□□□ 0.53
LRFN1Q9P244 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRFN1Q9P244 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRFN1Q9P244 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.35■□□□□ 0.53
LRFN1Q9P244 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
LRFN1Q9P244 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
LRFN1Q9P244 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LRFN1Q9P244 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRFN1Q9P244 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRFN1Q9P244 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.35■□□□□ 0.53
LRFN1Q9P244 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
LRFN1Q9P244 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRFN1Q9P244 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.35■□□□□ 0.53
LRFN1Q9P244 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LRFN1Q9P244 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.35■□□□□ 0.53
LRFN1Q9P244 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.35■□□□□ 0.53
LRFN1Q9P244 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.35■□□□□ 0.53
LRFN1Q9P244 AL031963.3-201ENST00000606441 850 ntBASIC18.35■□□□□ 0.53
LRFN1Q9P244 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.35■□□□□ 0.53
LRFN1Q9P244 AC005229.4-201ENST00000610085 2198 ntBASIC18.35■□□□□ 0.53
LRFN1Q9P244 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LRFN1Q9P244 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRFN1Q9P244 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRFN1Q9P244 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.35■□□□□ 0.53
LRFN1Q9P244 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRFN1Q9P244 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRFN1Q9P244 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.34■□□□□ 0.53
LRFN1Q9P244 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LRFN1Q9P244 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRFN1Q9P244 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
LRFN1Q9P244 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRFN1Q9P244 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.34■□□□□ 0.53
LRFN1Q9P244 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRFN1Q9P244 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRFN1Q9P244 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LRFN1Q9P244 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRFN1Q9P244 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
LRFN1Q9P244 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRFN1Q9P244 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.34■□□□□ 0.53
LRFN1Q9P244 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
LRFN1Q9P244 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.34■□□□□ 0.53
LRFN1Q9P244 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRFN1Q9P244 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.34■□□□□ 0.53
LRFN1Q9P244 MIR4497-201ENST00000583208 89 ntBASIC18.34■□□□□ 0.53
LRFN1Q9P244 AL121906.2-201ENST00000621597 723 ntBASIC18.34■□□□□ 0.53
LRFN1Q9P244 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.34■□□□□ 0.53
LRFN1Q9P244 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.34■□□□□ 0.53
LRFN1Q9P244 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.34■□□□□ 0.53
LRFN1Q9P244 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRFN1Q9P244 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.33■□□□□ 0.53
LRFN1Q9P244 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LRFN1Q9P244 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.33■□□□□ 0.53
LRFN1Q9P244 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.33■□□□□ 0.53
LRFN1Q9P244 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LRFN1Q9P244 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.33■□□□□ 0.53
LRFN1Q9P244 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
LRFN1Q9P244 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LRFN1Q9P244 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LRFN1Q9P244 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LRFN1Q9P244 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRFN1Q9P244 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.33■□□□□ 0.52
LRFN1Q9P244 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.33■□□□□ 0.52
LRFN1Q9P244 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.33■□□□□ 0.52
LRFN1Q9P244 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
LRFN1Q9P244 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRFN1Q9P244 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LRFN1Q9P244 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRFN1Q9P244 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.33■□□□□ 0.52
LRFN1Q9P244 KRT8P17-201ENST00000453110 1448 ntBASIC18.32■□□□□ 0.52
LRFN1Q9P244 AL135905.2-201ENST00000584934 1404 ntBASIC18.32■□□□□ 0.52
LRFN1Q9P244 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRFN1Q9P244 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.32■□□□□ 0.52
LRFN1Q9P244 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRFN1Q9P244 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
LRFN1Q9P244 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRFN1Q9P244 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRFN1Q9P244 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.32■□□□□ 0.52
LRFN1Q9P244 RPS2P55-201ENST00000397318 883 ntBASIC18.32■□□□□ 0.52
LRFN1Q9P244 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
LRFN1Q9P244 AC012618.2-201ENST00000428058 849 ntBASIC18.32■□□□□ 0.52
LRFN1Q9P244 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
LRFN1Q9P244 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.32■□□□□ 0.52
LRFN1Q9P244 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.32■□□□□ 0.52
LRFN1Q9P244 SNORA78-201ENST00000459373 127 ntBASIC18.32■□□□□ 0.52
LRFN1Q9P244 AC107956.1-201ENST00000494359 873 ntBASIC18.32■□□□□ 0.52
LRFN1Q9P244 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LRFN1Q9P244 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.32■□□□□ 0.52
LRFN1Q9P244 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
LRFN1Q9P244 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.32■□□□□ 0.52
LRFN1Q9P244 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.32■□□□□ 0.52
LRFN1Q9P244 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.32■□□□□ 0.52
LRFN1Q9P244 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms