Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 HES2-206ENST00000489730 730 ntTSL 2 BASIC22.27■■□□□ 1.16
BLOC1S4Q9NUP1 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC22.27■■□□□ 1.16
BLOC1S4Q9NUP1 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC22.27■■□□□ 1.16
BLOC1S4Q9NUP1 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
BLOC1S4Q9NUP1 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC22.27■■□□□ 1.16
BLOC1S4Q9NUP1 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC22.27■■□□□ 1.16
BLOC1S4Q9NUP1 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC22.27■■□□□ 1.16
BLOC1S4Q9NUP1 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
BLOC1S4Q9NUP1 KRT16P6-202ENST00000425692 1426 ntBASIC22.26■■□□□ 1.15
BLOC1S4Q9NUP1 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
BLOC1S4Q9NUP1 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
BLOC1S4Q9NUP1 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
BLOC1S4Q9NUP1 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
BLOC1S4Q9NUP1 SLC29A4P2-201ENST00000504749 1089 ntBASIC22.26■■□□□ 1.15
BLOC1S4Q9NUP1 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
BLOC1S4Q9NUP1 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
BLOC1S4Q9NUP1 HLA-B-256ENST00000639848 1089 ntBASIC22.26■■□□□ 1.15
BLOC1S4Q9NUP1 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC22.26■■□□□ 1.15
BLOC1S4Q9NUP1 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
BLOC1S4Q9NUP1 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC22.26■■□□□ 1.15
BLOC1S4Q9NUP1 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC22.26■■□□□ 1.15
BLOC1S4Q9NUP1 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
BLOC1S4Q9NUP1 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
BLOC1S4Q9NUP1 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC22.25■■□□□ 1.15
BLOC1S4Q9NUP1 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 RGMA-211ENST00000557420 989 ntTSL 3 BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 STK25-204ENST00000405585 1643 ntTSL 2 BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
BLOC1S4Q9NUP1 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 GGT1-206ENST00000404223 952 ntTSL 2 BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 APTR-205ENST00000447009 902 ntTSL 2 BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 AC060766.5-201ENST00000590539 871 ntBASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 AC006557.6-201ENST00000623071 864 ntBASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 AC092368.3-202ENST00000574180 1591 ntBASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 TMEM179-206ENST00000616017 1645 ntBASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC22.23■■□□□ 1.15
BLOC1S4Q9NUP1 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
BLOC1S4Q9NUP1 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
BLOC1S4Q9NUP1 PNMA6B-201ENST00000538162 1200 ntBASIC22.22■■□□□ 1.15
BLOC1S4Q9NUP1 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
BLOC1S4Q9NUP1 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC22.22■■□□□ 1.15
BLOC1S4Q9NUP1 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC22.22■■□□□ 1.15
BLOC1S4Q9NUP1 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC22.22■■□□□ 1.15
BLOC1S4Q9NUP1 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC22.22■■□□□ 1.15
BLOC1S4Q9NUP1 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC22.21■■□□□ 1.15
BLOC1S4Q9NUP1 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
BLOC1S4Q9NUP1 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms