Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HPS4Q9NQG7 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HPS4Q9NQG7 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HPS4Q9NQG7 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
HPS4Q9NQG7 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.7■□□□□ 0.9
HPS4Q9NQG7 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HPS4Q9NQG7 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.7■□□□□ 0.9
HPS4Q9NQG7 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HPS4Q9NQG7 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HPS4Q9NQG7 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HPS4Q9NQG7 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HPS4Q9NQG7 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.7■□□□□ 0.9
HPS4Q9NQG7 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.7■□□□□ 0.9
HPS4Q9NQG7 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HPS4Q9NQG7 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
HPS4Q9NQG7 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HPS4Q9NQG7 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.69■□□□□ 0.9
HPS4Q9NQG7 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HPS4Q9NQG7 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HPS4Q9NQG7 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.69■□□□□ 0.9
HPS4Q9NQG7 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.69■□□□□ 0.9
HPS4Q9NQG7 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.69■□□□□ 0.9
HPS4Q9NQG7 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.69■□□□□ 0.9
HPS4Q9NQG7 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HPS4Q9NQG7 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.69■□□□□ 0.9
HPS4Q9NQG7 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HPS4Q9NQG7 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HPS4Q9NQG7 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HPS4Q9NQG7 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HPS4Q9NQG7 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 AL049796.1-201ENST00000565336 1766 ntBASIC20.68■□□□□ 0.9
HPS4Q9NQG7 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HPS4Q9NQG7 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HPS4Q9NQG7 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.67■□□□□ 0.9
HPS4Q9NQG7 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.67■□□□□ 0.9
HPS4Q9NQG7 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HPS4Q9NQG7 AC087499.1-201ENST00000418141 1075 ntBASIC20.67■□□□□ 0.9
HPS4Q9NQG7 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.67■□□□□ 0.9
HPS4Q9NQG7 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.67■□□□□ 0.9
HPS4Q9NQG7 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.67■□□□□ 0.9
HPS4Q9NQG7 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.67■□□□□ 0.9
HPS4Q9NQG7 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.67■□□□□ 0.9
HPS4Q9NQG7 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HPS4Q9NQG7 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HPS4Q9NQG7 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HPS4Q9NQG7 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HPS4Q9NQG7 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HPS4Q9NQG7 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HPS4Q9NQG7 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HPS4Q9NQG7 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HPS4Q9NQG7 AC121338.2-201ENST00000622535 1744 ntBASIC20.67■□□□□ 0.9
HPS4Q9NQG7 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
HPS4Q9NQG7 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 HTR7P1-201ENST00000538670 1336 ntBASIC20.66■□□□□ 0.9
HPS4Q9NQG7 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HPS4Q9NQG7 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms