Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 MCRIP2P1-201ENST00000394346 511 ntBASIC20.63■□□□□ 0.89
PCDH9Q9HC56 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 AL121832.2-201ENST00000610979 668 ntBASIC20.63■□□□□ 0.89
PCDH9Q9HC56 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.62■□□□□ 0.89
PCDH9Q9HC56 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDH9Q9HC56 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.62■□□□□ 0.89
PCDH9Q9HC56 AC010980.2-201ENST00000587099 1412 ntBASIC20.62■□□□□ 0.89
PCDH9Q9HC56 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.62■□□□□ 0.89
PCDH9Q9HC56 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDH9Q9HC56 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PCDH9Q9HC56 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.62■□□□□ 0.89
PCDH9Q9HC56 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.62■□□□□ 0.89
PCDH9Q9HC56 NCF1B-203ENST00000435988 1254 ntBASIC20.62■□□□□ 0.89
PCDH9Q9HC56 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.62■□□□□ 0.89
PCDH9Q9HC56 AC083906.2-201ENST00000511578 360 ntBASIC20.62■□□□□ 0.89
PCDH9Q9HC56 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.62■□□□□ 0.89
PCDH9Q9HC56 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.62■□□□□ 0.89
PCDH9Q9HC56 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDH9Q9HC56 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PCDH9Q9HC56 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.62■□□□□ 0.89
PCDH9Q9HC56 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.62■□□□□ 0.89
PCDH9Q9HC56 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDH9Q9HC56 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 AC116562.4-201ENST00000641316 2276 ntBASIC20.61■□□□□ 0.89
PCDH9Q9HC56 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.61■□□□□ 0.89
PCDH9Q9HC56 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.61■□□□□ 0.89
PCDH9Q9HC56 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.61■□□□□ 0.89
PCDH9Q9HC56 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PCDH9Q9HC56 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.6■□□□□ 0.89
PCDH9Q9HC56 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 MKRN4P-201ENST00000444706 1521 ntBASIC20.59■□□□□ 0.89
PCDH9Q9HC56 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 GPX1P1-201ENST00000388829 606 ntBASIC20.59■□□□□ 0.89
PCDH9Q9HC56 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 AL355472.2-201ENST00000422958 438 ntBASIC20.59■□□□□ 0.89
PCDH9Q9HC56 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms