Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC25.5■■□□□ 1.67
USP42Q9H9J4 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
USP42Q9H9J4 AP002982.1-201ENST00000492365 877 ntBASIC25.5■■□□□ 1.67
USP42Q9H9J4 NME3-204ENST00000563498 920 ntTSL 2 BASIC25.5■■□□□ 1.67
USP42Q9H9J4 AC004264.1-201ENST00000608354 794 ntBASIC25.5■■□□□ 1.67
USP42Q9H9J4 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC25.5■■□□□ 1.67
USP42Q9H9J4 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
USP42Q9H9J4 CYP2D8P-201ENST00000433633 1490 ntBASIC25.49■■□□□ 1.67
USP42Q9H9J4 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
USP42Q9H9J4 KRT8P36-201ENST00000489121 1440 ntBASIC25.49■■□□□ 1.67
USP42Q9H9J4 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
USP42Q9H9J4 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
USP42Q9H9J4 TERF1P1-201ENST00000311003 1181 ntBASIC25.49■■□□□ 1.67
USP42Q9H9J4 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC25.49■■□□□ 1.67
USP42Q9H9J4 AL390955.1-201ENST00000428694 934 ntBASIC25.49■■□□□ 1.67
USP42Q9H9J4 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC25.49■■□□□ 1.67
USP42Q9H9J4 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC25.49■■□□□ 1.67
USP42Q9H9J4 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC25.49■■□□□ 1.67
USP42Q9H9J4 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC25.49■■□□□ 1.67
USP42Q9H9J4 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
USP42Q9H9J4 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC25.49■■□□□ 1.67
USP42Q9H9J4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
USP42Q9H9J4 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC25.49■■□□□ 1.67
USP42Q9H9J4 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
USP42Q9H9J4 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
USP42Q9H9J4 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
USP42Q9H9J4 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
USP42Q9H9J4 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
USP42Q9H9J4 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
USP42Q9H9J4 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
USP42Q9H9J4 AC073508.3-201ENST00000619697 1419 ntBASIC25.48■■□□□ 1.67
USP42Q9H9J4 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
USP42Q9H9J4 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
USP42Q9H9J4 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
USP42Q9H9J4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
USP42Q9H9J4 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC25.48■■□□□ 1.67
USP42Q9H9J4 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
USP42Q9H9J4 RNF146-204ENST00000476956 884 ntTSL 2 BASIC25.48■■□□□ 1.67
USP42Q9H9J4 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
USP42Q9H9J4 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
USP42Q9H9J4 RMI2-205ENST00000576027 818 ntTSL 2 BASIC25.48■■□□□ 1.67
USP42Q9H9J4 RBM42-202ENST00000586618 771 ntTSL 3 BASIC25.48■■□□□ 1.67
USP42Q9H9J4 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC25.48■■□□□ 1.67
USP42Q9H9J4 AC010947.1-201ENST00000623454 693 ntBASIC25.48■■□□□ 1.67
USP42Q9H9J4 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC25.48■■□□□ 1.67
USP42Q9H9J4 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
USP42Q9H9J4 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
USP42Q9H9J4 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
USP42Q9H9J4 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
USP42Q9H9J4 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
USP42Q9H9J4 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
USP42Q9H9J4 AC116562.2-201ENST00000507042 360 ntBASIC25.47■■□□□ 1.67
USP42Q9H9J4 FITM1-202ENST00000559294 800 ntBASIC25.47■■□□□ 1.67
USP42Q9H9J4 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC25.47■■□□□ 1.67
USP42Q9H9J4 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
USP42Q9H9J4 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
USP42Q9H9J4 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
USP42Q9H9J4 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
USP42Q9H9J4 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
USP42Q9H9J4 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
USP42Q9H9J4 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC25.46■■□□□ 1.67
USP42Q9H9J4 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC25.46■■□□□ 1.67
USP42Q9H9J4 NAPSB-206ENST00000562112 1266 ntBASIC25.46■■□□□ 1.67
USP42Q9H9J4 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
USP42Q9H9J4 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC25.46■■□□□ 1.67
USP42Q9H9J4 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC25.46■■□□□ 1.67
USP42Q9H9J4 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
USP42Q9H9J4 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC25.46■■□□□ 1.67
USP42Q9H9J4 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
USP42Q9H9J4 AC027702.1-201ENST00000563810 1770 ntBASIC25.46■■□□□ 1.67
USP42Q9H9J4 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC25.46■■□□□ 1.67
USP42Q9H9J4 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
USP42Q9H9J4 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
USP42Q9H9J4 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
USP42Q9H9J4 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
USP42Q9H9J4 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC25.45■■□□□ 1.67
USP42Q9H9J4 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC25.45■■□□□ 1.67
USP42Q9H9J4 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC25.45■■□□□ 1.66
USP42Q9H9J4 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC25.45■■□□□ 1.66
USP42Q9H9J4 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC25.45■■□□□ 1.66
USP42Q9H9J4 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC25.45■■□□□ 1.66
USP42Q9H9J4 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
USP42Q9H9J4 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC25.45■■□□□ 1.66
USP42Q9H9J4 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC25.45■■□□□ 1.66
USP42Q9H9J4 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
USP42Q9H9J4 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.66
USP42Q9H9J4 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.66
USP42Q9H9J4 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
USP42Q9H9J4 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
USP42Q9H9J4 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC25.44■■□□□ 1.66
USP42Q9H9J4 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
USP42Q9H9J4 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
USP42Q9H9J4 MIR2861-201ENST00000636310 90 ntBASIC25.44■■□□□ 1.66
USP42Q9H9J4 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC25.44■■□□□ 1.66
USP42Q9H9J4 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC25.44■■□□□ 1.66
USP42Q9H9J4 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
USP42Q9H9J4 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC25.44■■□□□ 1.66
USP42Q9H9J4 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC25.44■■□□□ 1.66
USP42Q9H9J4 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
USP42Q9H9J4 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC25.44■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms