Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 C1QL1P1-201ENST00000568105 661 ntBASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 SLC25A6P4-201ENST00000586535 553 ntBASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 AC120114.3-201ENST00000611923 658 ntBASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 HYMAI.1-201ENST00000620949 238 ntBASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 AC139530.1-201ENST00000575312 1977 ntBASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 KRT8P8-201ENST00000434750 1448 ntBASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LRFN3Q9BTN0 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 PMS2P1-201ENST00000431037 1228 ntBASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 AC131212.4-201ENST00000623606 975 ntBASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRFN3Q9BTN0 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.08■□□□□ 0.81
LRFN3Q9BTN0 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LRFN3Q9BTN0 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LRFN3Q9BTN0 LINC01311-201ENST00000565162 1445 ntBASIC20.08■□□□□ 0.8
LRFN3Q9BTN0 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.07■□□□□ 0.8
LRFN3Q9BTN0 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.07■□□□□ 0.8
LRFN3Q9BTN0 AL662844.1-201ENST00000546340 181 ntBASIC20.07■□□□□ 0.8
LRFN3Q9BTN0 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
LRFN3Q9BTN0 AL355385.1-201ENST00000606123 409 ntBASIC20.07■□□□□ 0.8
LRFN3Q9BTN0 BX640515.1-201ENST00000617215 977 ntBASIC20.07■□□□□ 0.8
LRFN3Q9BTN0 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.07■□□□□ 0.8
LRFN3Q9BTN0 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LRFN3Q9BTN0 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRFN3Q9BTN0 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.07■□□□□ 0.8
LRFN3Q9BTN0 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRFN3Q9BTN0 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LRFN3Q9BTN0 ANOS2P-203ENST00000472227 1816 ntBASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 NUS1P1-201ENST00000446295 882 ntBASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 AC092865.5-201ENST00000545435 363 ntBASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRFN3Q9BTN0 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
LRFN3Q9BTN0 AC092068.2-201ENST00000590491 1708 ntBASIC20.05■□□□□ 0.8
LRFN3Q9BTN0 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRFN3Q9BTN0 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRFN3Q9BTN0 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms