Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 RARRES2P1-201ENST00000474487 481 ntBASIC18.8■□□□□ 0.6
NR1H4Q96RI1 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.8■□□□□ 0.6
NR1H4Q96RI1 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NR1H4Q96RI1 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
NR1H4Q96RI1 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
NR1H4Q96RI1 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NR1H4Q96RI1 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
NR1H4Q96RI1 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NR1H4Q96RI1 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 AC239859.2-201ENST00000444165 318 ntBASIC18.79■□□□□ 0.6
NR1H4Q96RI1 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 MTDHP2-201ENST00000601468 714 ntBASIC18.79■□□□□ 0.6
NR1H4Q96RI1 MIR4787-201ENST00000607364 84 ntBASIC18.79■□□□□ 0.6
NR1H4Q96RI1 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 AL691432.2-201ENST00000607222 2038 ntBASIC18.79■□□□□ 0.6
NR1H4Q96RI1 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NR1H4Q96RI1 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 VGF-203ENST00000611537 1622 ntTSL 5 BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 AC009102.2-201ENST00000606772 1639 ntBASIC18.78■□□□□ 0.6
NR1H4Q96RI1 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NR1H4Q96RI1 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
NR1H4Q96RI1 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NR1H4Q96RI1 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
NR1H4Q96RI1 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
NR1H4Q96RI1 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NR1H4Q96RI1 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NR1H4Q96RI1 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
NR1H4Q96RI1 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.77■□□□□ 0.6
NR1H4Q96RI1 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.77■□□□□ 0.6
NR1H4Q96RI1 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
NR1H4Q96RI1 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
NR1H4Q96RI1 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC18.77■□□□□ 0.6
NR1H4Q96RI1 TSPY9P-201ENST00000440215 945 ntBASIC18.77■□□□□ 0.6
NR1H4Q96RI1 TSPY11P-201ENST00000442607 1045 ntBASIC18.77■□□□□ 0.6
NR1H4Q96RI1 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NR1H4Q96RI1 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.77■□□□□ 0.6
NR1H4Q96RI1 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NR1H4Q96RI1 BX005040.4-201ENST00000637145 1518 ntBASIC18.77■□□□□ 0.6
NR1H4Q96RI1 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NR1H4Q96RI1 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NR1H4Q96RI1 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
NR1H4Q96RI1 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
NR1H4Q96RI1 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
NR1H4Q96RI1 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
NR1H4Q96RI1 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
NR1H4Q96RI1 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.77■□□□□ 0.59
NR1H4Q96RI1 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
NR1H4Q96RI1 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.76■□□□□ 0.59
NR1H4Q96RI1 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
NR1H4Q96RI1 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NR1H4Q96RI1 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms