Protein–RNA interactions for Protein: Q96NG5

ZNF558, Zinc finger protein 558, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558Q96NG5 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.31■■□□□ 1
ZNF558Q96NG5 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.31■■□□□ 1
ZNF558Q96NG5 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.31■■□□□ 1
ZNF558Q96NG5 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
ZNF558Q96NG5 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ZNF558Q96NG5 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.3■■□□□ 1
ZNF558Q96NG5 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.3■■□□□ 1
ZNF558Q96NG5 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.3■■□□□ 1
ZNF558Q96NG5 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.3■■□□□ 1
ZNF558Q96NG5 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.3■■□□□ 1
ZNF558Q96NG5 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ZNF558Q96NG5 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC21.3■■□□□ 1
ZNF558Q96NG5 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC21.3■■□□□ 1
ZNF558Q96NG5 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21.3■■□□□ 1
ZNF558Q96NG5 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC21.3■■□□□ 1
ZNF558Q96NG5 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC21.3■■□□□ 1
ZNF558Q96NG5 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC21.3■■□□□ 1
ZNF558Q96NG5 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.3■■□□□ 1
ZNF558Q96NG5 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
ZNF558Q96NG5 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.3■■□□□ 1
ZNF558Q96NG5 NAPSB-206ENST00000562112 1266 ntBASIC21.3■■□□□ 1
ZNF558Q96NG5 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.3■■□□□ 1
ZNF558Q96NG5 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.3■■□□□ 1
ZNF558Q96NG5 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.3■■□□□ 1
ZNF558Q96NG5 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ZNF558Q96NG5 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21.3■■□□□ 1
ZNF558Q96NG5 LINC01568-207ENST00000641790 1380 ntBASIC21.3■■□□□ 1
ZNF558Q96NG5 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ZNF558Q96NG5 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC21.3■■□□□ 1
ZNF558Q96NG5 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ZNF558Q96NG5 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.29■■□□□ 1
ZNF558Q96NG5 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.29■■□□□ 1
ZNF558Q96NG5 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ZNF558Q96NG5 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.29■■□□□ 1
ZNF558Q96NG5 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.29■■□□□ 1
ZNF558Q96NG5 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.29■■□□□ 1
ZNF558Q96NG5 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
ZNF558Q96NG5 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ZNF558Q96NG5 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ZNF558Q96NG5 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.29■■□□□ 1
ZNF558Q96NG5 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ZNF558Q96NG5 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC21.29■■□□□ 1
ZNF558Q96NG5 AL390955.1-201ENST00000428694 934 ntBASIC21.29■■□□□ 1
ZNF558Q96NG5 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.29■■□□□ 1
ZNF558Q96NG5 FITM1-202ENST00000559294 800 ntBASIC21.29■■□□□ 1
ZNF558Q96NG5 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.29■■□□□ 1
ZNF558Q96NG5 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC21.29■■□□□ 1
ZNF558Q96NG5 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.29■■□□□ 1
ZNF558Q96NG5 PLK5-205ENST00000642079 1969 ntBASIC21.28■■□□□ 1
ZNF558Q96NG5 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
ZNF558Q96NG5 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
ZNF558Q96NG5 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ZNF558Q96NG5 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.28■■□□□ 1
ZNF558Q96NG5 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
ZNF558Q96NG5 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC21.28■■□□□ 1
ZNF558Q96NG5 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.28■■□□□ 1
ZNF558Q96NG5 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.28■■□□□ 1
ZNF558Q96NG5 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC21.28■■□□□ 1
ZNF558Q96NG5 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.28■■□□□ 1
ZNF558Q96NG5 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC21.28■■□□□ 1
ZNF558Q96NG5 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.28■■□□□ 1
ZNF558Q96NG5 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC21.28■■□□□ 1
ZNF558Q96NG5 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
ZNF558Q96NG5 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.28■■□□□ 1
ZNF558Q96NG5 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.28■■□□□ 1
ZNF558Q96NG5 EP400NL-214ENST00000641289 2402 ntBASIC21.28■■□□□ 1
ZNF558Q96NG5 AP006587.1-201ENST00000534129 1502 ntBASIC21.28■■□□□ 1
ZNF558Q96NG5 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.28■■□□□ 1
ZNF558Q96NG5 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.28■■□□□ 1
ZNF558Q96NG5 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ZNF558Q96NG5 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
ZNF558Q96NG5 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
ZNF558Q96NG5 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.27■■□□□ 1
ZNF558Q96NG5 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.27■■□□□ 1
ZNF558Q96NG5 FEM1AP4-201ENST00000443167 1987 ntBASIC21.27■■□□□ 1
ZNF558Q96NG5 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
ZNF558Q96NG5 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
ZNF558Q96NG5 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.27■■□□□ 1
ZNF558Q96NG5 AC005521.1-201ENST00000393351 872 ntBASIC21.27■■□□□ 1
ZNF558Q96NG5 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.27■■□□□ 1
ZNF558Q96NG5 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
ZNF558Q96NG5 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.27■■□□□ 1
ZNF558Q96NG5 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC21.27■■□□□ 1
ZNF558Q96NG5 KRT18P35-201ENST00000510488 1269 ntBASIC21.27■■□□□ 1
ZNF558Q96NG5 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.27■■□□□ 1
ZNF558Q96NG5 AL049597.2-201ENST00000565575 961 ntBASIC21.27■■□□□ 1
ZNF558Q96NG5 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
ZNF558Q96NG5 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.27■■□□□ 1
ZNF558Q96NG5 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
ZNF558Q96NG5 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF558Q96NG5 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
ZNF558Q96NG5 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.26■□□□□ 0.99
ZNF558Q96NG5 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC21.26■□□□□ 0.99
ZNF558Q96NG5 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.26■□□□□ 0.99
ZNF558Q96NG5 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
ZNF558Q96NG5 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF558Q96NG5 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC21.26■□□□□ 0.99
ZNF558Q96NG5 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC21.26■□□□□ 0.99
ZNF558Q96NG5 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF558Q96NG5 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms