Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AP005212.1-201ENST00000581547 1997 ntBASIC19.08■□□□□ 0.64
VMP1Q96GC9 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.08■□□□□ 0.64
VMP1Q96GC9 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VMP1Q96GC9 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.08■□□□□ 0.64
VMP1Q96GC9 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.08■□□□□ 0.64
VMP1Q96GC9 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VMP1Q96GC9 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VMP1Q96GC9 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.07■□□□□ 0.64
VMP1Q96GC9 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VMP1Q96GC9 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VMP1Q96GC9 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VMP1Q96GC9 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VMP1Q96GC9 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.07■□□□□ 0.64
VMP1Q96GC9 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VMP1Q96GC9 KRT18P68-201ENST00000392293 1000 ntBASIC19.07■□□□□ 0.64
VMP1Q96GC9 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VMP1Q96GC9 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.07■□□□□ 0.64
VMP1Q96GC9 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.07■□□□□ 0.64
VMP1Q96GC9 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.07■□□□□ 0.64
VMP1Q96GC9 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.07■□□□□ 0.64
VMP1Q96GC9 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.07■□□□□ 0.64
VMP1Q96GC9 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.07■□□□□ 0.64
VMP1Q96GC9 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.07■□□□□ 0.64
VMP1Q96GC9 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.07■□□□□ 0.64
VMP1Q96GC9 AL589743.5-201ENST00000616611 1050 ntBASIC19.07■□□□□ 0.64
VMP1Q96GC9 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.07■□□□□ 0.64
VMP1Q96GC9 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VMP1Q96GC9 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VMP1Q96GC9 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.07■□□□□ 0.64
VMP1Q96GC9 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VMP1Q96GC9 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.07■□□□□ 0.64
VMP1Q96GC9 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.06■□□□□ 0.64
VMP1Q96GC9 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VMP1Q96GC9 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.06■□□□□ 0.64
VMP1Q96GC9 BX323043.1-201ENST00000641006 1765 ntBASIC19.06■□□□□ 0.64
VMP1Q96GC9 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VMP1Q96GC9 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.06■□□□□ 0.64
VMP1Q96GC9 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
VMP1Q96GC9 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.06■□□□□ 0.64
VMP1Q96GC9 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VMP1Q96GC9 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
VMP1Q96GC9 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.06■□□□□ 0.64
VMP1Q96GC9 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
VMP1Q96GC9 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
VMP1Q96GC9 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
VMP1Q96GC9 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VMP1Q96GC9 PGM5P4-201ENST00000421970 445 ntBASIC19.06■□□□□ 0.64
VMP1Q96GC9 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.06■□□□□ 0.64
VMP1Q96GC9 AC098934.4-201ENST00000564127 592 ntBASIC19.06■□□□□ 0.64
VMP1Q96GC9 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
VMP1Q96GC9 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VMP1Q96GC9 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VMP1Q96GC9 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
VMP1Q96GC9 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VMP1Q96GC9 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.06■□□□□ 0.64
VMP1Q96GC9 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VMP1Q96GC9 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
VMP1Q96GC9 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
VMP1Q96GC9 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VMP1Q96GC9 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VMP1Q96GC9 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.05■□□□□ 0.64
VMP1Q96GC9 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
VMP1Q96GC9 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.05■□□□□ 0.64
VMP1Q96GC9 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VMP1Q96GC9 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.05■□□□□ 0.64
VMP1Q96GC9 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.05■□□□□ 0.64
VMP1Q96GC9 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VMP1Q96GC9 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VMP1Q96GC9 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.05■□□□□ 0.64
VMP1Q96GC9 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
VMP1Q96GC9 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
VMP1Q96GC9 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.05■□□□□ 0.64
VMP1Q96GC9 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.05■□□□□ 0.64
VMP1Q96GC9 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.05■□□□□ 0.64
VMP1Q96GC9 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.05■□□□□ 0.64
VMP1Q96GC9 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.05■□□□□ 0.64
VMP1Q96GC9 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
VMP1Q96GC9 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VMP1Q96GC9 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VMP1Q96GC9 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VMP1Q96GC9 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VMP1Q96GC9 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.05■□□□□ 0.64
VMP1Q96GC9 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VMP1Q96GC9 KRT17P1-201ENST00000399211 1546 ntBASIC19.05■□□□□ 0.64
VMP1Q96GC9 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.05■□□□□ 0.64
VMP1Q96GC9 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VMP1Q96GC9 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VMP1Q96GC9 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VMP1Q96GC9 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.04■□□□□ 0.64
VMP1Q96GC9 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VMP1Q96GC9 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VMP1Q96GC9 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
VMP1Q96GC9 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
VMP1Q96GC9 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.04■□□□□ 0.64
VMP1Q96GC9 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.04■□□□□ 0.64
VMP1Q96GC9 AC087633.2-202ENST00000565166 1439 ntBASIC19.04■□□□□ 0.64
VMP1Q96GC9 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VMP1Q96GC9 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
VMP1Q96GC9 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
VMP1Q96GC9 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms