Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
ATG4AQ8WYN0 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.7■□□□□ 0.9
ATG4AQ8WYN0 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
ATG4AQ8WYN0 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 CNN2P6-201ENST00000439038 900 ntBASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 AL162412.1-201ENST00000567129 965 ntBASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 AC011767.1-201ENST00000617410 1153 ntBASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATG4AQ8WYN0 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
ATG4AQ8WYN0 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 KRT18P11-201ENST00000435214 1283 ntBASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 RARRES2P4-201ENST00000514074 484 ntBASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 AC093484.2-201ENST00000580996 2166 ntBASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.67■□□□□ 0.9
ATG4AQ8WYN0 AC098818.2-201ENST00000564925 2320 ntBASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 DUX4L16-201ENST00000555130 1264 ntBASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 AC068338.2-201ENST00000563278 1430 ntBASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
ATG4AQ8WYN0 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms