Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC26.48■■□□□ 1.83
USHBP1Q8N6Y0 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC26.48■■□□□ 1.83
USHBP1Q8N6Y0 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC26.48■■□□□ 1.83
USHBP1Q8N6Y0 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
USHBP1Q8N6Y0 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC26.47■■□□□ 1.83
USHBP1Q8N6Y0 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC26.47■■□□□ 1.83
USHBP1Q8N6Y0 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC26.47■■□□□ 1.83
USHBP1Q8N6Y0 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC26.47■■□□□ 1.83
USHBP1Q8N6Y0 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
USHBP1Q8N6Y0 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
USHBP1Q8N6Y0 MIR1238-201ENST00000408483 83 ntBASIC26.47■■□□□ 1.83
USHBP1Q8N6Y0 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC26.47■■□□□ 1.83
USHBP1Q8N6Y0 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC26.47■■□□□ 1.83
USHBP1Q8N6Y0 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC26.47■■□□□ 1.83
USHBP1Q8N6Y0 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC26.47■■□□□ 1.83
USHBP1Q8N6Y0 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
USHBP1Q8N6Y0 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
USHBP1Q8N6Y0 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC26.47■■□□□ 1.83
USHBP1Q8N6Y0 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC26.47■■□□□ 1.83
USHBP1Q8N6Y0 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
USHBP1Q8N6Y0 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
USHBP1Q8N6Y0 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
USHBP1Q8N6Y0 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC26.46■■□□□ 1.83
USHBP1Q8N6Y0 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
USHBP1Q8N6Y0 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
USHBP1Q8N6Y0 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC26.46■■□□□ 1.83
USHBP1Q8N6Y0 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
USHBP1Q8N6Y0 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
USHBP1Q8N6Y0 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
USHBP1Q8N6Y0 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
USHBP1Q8N6Y0 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC26.46■■□□□ 1.83
USHBP1Q8N6Y0 CYP2D8P-201ENST00000433633 1490 ntBASIC26.45■■□□□ 1.82
USHBP1Q8N6Y0 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.82
USHBP1Q8N6Y0 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC26.45■■□□□ 1.82
USHBP1Q8N6Y0 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC26.45■■□□□ 1.82
USHBP1Q8N6Y0 AL445228.2-201ENST00000605589 952 ntBASIC26.45■■□□□ 1.82
USHBP1Q8N6Y0 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
USHBP1Q8N6Y0 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
USHBP1Q8N6Y0 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC26.45■■□□□ 1.82
USHBP1Q8N6Y0 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
USHBP1Q8N6Y0 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
USHBP1Q8N6Y0 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
USHBP1Q8N6Y0 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
USHBP1Q8N6Y0 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC26.44■■□□□ 1.82
USHBP1Q8N6Y0 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC26.44■■□□□ 1.82
USHBP1Q8N6Y0 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC26.44■■□□□ 1.82
USHBP1Q8N6Y0 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC26.44■■□□□ 1.82
USHBP1Q8N6Y0 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC26.44■■□□□ 1.82
USHBP1Q8N6Y0 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC26.44■■□□□ 1.82
USHBP1Q8N6Y0 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
USHBP1Q8N6Y0 KRT8P17-201ENST00000453110 1448 ntBASIC26.44■■□□□ 1.82
USHBP1Q8N6Y0 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC26.44■■□□□ 1.82
USHBP1Q8N6Y0 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC26.44■■□□□ 1.82
USHBP1Q8N6Y0 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
USHBP1Q8N6Y0 DPP3P2-201ENST00000416030 1696 ntBASIC26.44■■□□□ 1.82
USHBP1Q8N6Y0 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
USHBP1Q8N6Y0 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
USHBP1Q8N6Y0 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC26.43■■□□□ 1.82
USHBP1Q8N6Y0 AC145285.6-201ENST00000604632 637 ntBASIC26.43■■□□□ 1.82
USHBP1Q8N6Y0 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
USHBP1Q8N6Y0 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC26.42■■□□□ 1.82
USHBP1Q8N6Y0 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC26.42■■□□□ 1.82
USHBP1Q8N6Y0 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC26.42■■□□□ 1.82
USHBP1Q8N6Y0 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
USHBP1Q8N6Y0 UNC93B2-201ENST00000285383 730 ntBASIC26.42■■□□□ 1.82
USHBP1Q8N6Y0 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
USHBP1Q8N6Y0 CALM3-202ENST00000391918 702 ntTSL 2 BASIC26.42■■□□□ 1.82
USHBP1Q8N6Y0 NIFKP9-201ENST00000419265 221 ntBASIC26.42■■□□□ 1.82
USHBP1Q8N6Y0 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
USHBP1Q8N6Y0 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC26.42■■□□□ 1.82
USHBP1Q8N6Y0 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
USHBP1Q8N6Y0 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
USHBP1Q8N6Y0 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC26.41■■□□□ 1.82
USHBP1Q8N6Y0 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
USHBP1Q8N6Y0 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
USHBP1Q8N6Y0 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
USHBP1Q8N6Y0 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
USHBP1Q8N6Y0 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
USHBP1Q8N6Y0 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
USHBP1Q8N6Y0 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
USHBP1Q8N6Y0 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC26.41■■□□□ 1.82
USHBP1Q8N6Y0 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
USHBP1Q8N6Y0 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
USHBP1Q8N6Y0 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
USHBP1Q8N6Y0 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
USHBP1Q8N6Y0 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC26.41■■□□□ 1.82
USHBP1Q8N6Y0 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
USHBP1Q8N6Y0 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC26.41■■□□□ 1.82
USHBP1Q8N6Y0 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
USHBP1Q8N6Y0 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
USHBP1Q8N6Y0 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC26.4■■□□□ 1.82
USHBP1Q8N6Y0 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC26.4■■□□□ 1.82
USHBP1Q8N6Y0 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
USHBP1Q8N6Y0 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC26.4■■□□□ 1.82
USHBP1Q8N6Y0 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
USHBP1Q8N6Y0 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
USHBP1Q8N6Y0 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
USHBP1Q8N6Y0 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
USHBP1Q8N6Y0 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC26.4■■□□□ 1.82
USHBP1Q8N6Y0 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC26.4■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms