Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
VPS52Q8N1B4 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.64■■□□□ 1.06
VPS52Q8N1B4 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
VPS52Q8N1B4 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
VPS52Q8N1B4 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
VPS52Q8N1B4 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
VPS52Q8N1B4 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
VPS52Q8N1B4 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
VPS52Q8N1B4 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.64■■□□□ 1.05
VPS52Q8N1B4 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
VPS52Q8N1B4 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS52Q8N1B4 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS52Q8N1B4 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
VPS52Q8N1B4 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC21.64■■□□□ 1.05
VPS52Q8N1B4 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.64■■□□□ 1.05
VPS52Q8N1B4 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS52Q8N1B4 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.64■■□□□ 1.05
VPS52Q8N1B4 STK25-205ENST00000405883 1904 ntTSL 2 BASIC21.64■■□□□ 1.05
VPS52Q8N1B4 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS52Q8N1B4 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS52Q8N1B4 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
VPS52Q8N1B4 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.64■■□□□ 1.05
VPS52Q8N1B4 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
VPS52Q8N1B4 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 FAM210CP-201ENST00000445714 574 ntBASIC21.62■■□□□ 1.05
VPS52Q8N1B4 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 AC113410.3-201ENST00000623366 203 ntBASIC21.62■■□□□ 1.05
VPS52Q8N1B4 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.62■■□□□ 1.05
VPS52Q8N1B4 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 AC011484.1-201ENST00000377652 1995 ntBASIC21.61■■□□□ 1.05
VPS52Q8N1B4 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 PRKY-204ENST00000533551 1019 ntBASIC21.61■■□□□ 1.05
VPS52Q8N1B4 RARRES2P10-201ENST00000564312 460 ntBASIC21.61■■□□□ 1.05
VPS52Q8N1B4 MIR4785-201ENST00000585005 73 ntBASIC21.61■■□□□ 1.05
VPS52Q8N1B4 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS52Q8N1B4 AC073130.3-201ENST00000624389 2278 ntBASIC21.6■■□□□ 1.05
VPS52Q8N1B4 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS52Q8N1B4 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VPS52Q8N1B4 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC21.6■■□□□ 1.05
VPS52Q8N1B4 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS52Q8N1B4 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.6■■□□□ 1.05
VPS52Q8N1B4 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS52Q8N1B4 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
VPS52Q8N1B4 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS52Q8N1B4 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC21.6■■□□□ 1.05
VPS52Q8N1B4 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VPS52Q8N1B4 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.6■■□□□ 1.05
VPS52Q8N1B4 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
VPS52Q8N1B4 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.6■■□□□ 1.05
VPS52Q8N1B4 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms