Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 AL050303.2-201ENST00000619798 666 ntBASIC18.17■□□□□ 0.5
NIPAL3Q6P499 OR10C1-204ENST00000622521 1039 ntBASIC18.17■□□□□ 0.5
NIPAL3Q6P499 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
NIPAL3Q6P499 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.17■□□□□ 0.5
NIPAL3Q6P499 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NIPAL3Q6P499 AC116562.4-201ENST00000641316 2276 ntBASIC18.17■□□□□ 0.5
NIPAL3Q6P499 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
NIPAL3Q6P499 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
NIPAL3Q6P499 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NIPAL3Q6P499 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NIPAL3Q6P499 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.17■□□□□ 0.5
NIPAL3Q6P499 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.17■□□□□ 0.5
NIPAL3Q6P499 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.17■□□□□ 0.5
NIPAL3Q6P499 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NIPAL3Q6P499 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 AL158211.5-201ENST00000623583 2518 ntBASIC18.16■□□□□ 0.5
NIPAL3Q6P499 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
NIPAL3Q6P499 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 CYP21A1P-202ENST00000354927 1481 ntBASIC18.15■□□□□ 0.5
NIPAL3Q6P499 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 AC090192.1-201ENST00000517740 490 ntBASIC18.15■□□□□ 0.5
NIPAL3Q6P499 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NIPAL3Q6P499 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.5
NIPAL3Q6P499 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.14■□□□□ 0.49
NIPAL3Q6P499 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
NIPAL3Q6P499 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.14■□□□□ 0.49
NIPAL3Q6P499 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NIPAL3Q6P499 AC093787.1-201ENST00000450396 207 ntBASIC18.14■□□□□ 0.49
NIPAL3Q6P499 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.14■□□□□ 0.49
NIPAL3Q6P499 AF201337.1-201ENST00000520239 748 ntBASIC18.14■□□□□ 0.49
NIPAL3Q6P499 AC105036.2-201ENST00000569468 176 ntBASIC18.14■□□□□ 0.49
NIPAL3Q6P499 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
NIPAL3Q6P499 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
NIPAL3Q6P499 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.14■□□□□ 0.49
NIPAL3Q6P499 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NIPAL3Q6P499 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NIPAL3Q6P499 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
NIPAL3Q6P499 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.14■□□□□ 0.49
NIPAL3Q6P499 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
NIPAL3Q6P499 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.14■□□□□ 0.49
NIPAL3Q6P499 KRT8P36-201ENST00000489121 1440 ntBASIC18.14■□□□□ 0.49
NIPAL3Q6P499 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NIPAL3Q6P499 AC087289.5-201ENST00000586076 3175 ntBASIC18.14■□□□□ 0.49
NIPAL3Q6P499 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
NIPAL3Q6P499 RNF165-205ENST00000588679 2904 ntBASIC18.13■□□□□ 0.49
NIPAL3Q6P499 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
NIPAL3Q6P499 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NIPAL3Q6P499 DPP3P2-201ENST00000416030 1696 ntBASIC18.13■□□□□ 0.49
NIPAL3Q6P499 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.13■□□□□ 0.49
NIPAL3Q6P499 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
NIPAL3Q6P499 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
NIPAL3Q6P499 MCRIP2P1-201ENST00000394346 511 ntBASIC18.13■□□□□ 0.49
NIPAL3Q6P499 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.13■□□□□ 0.49
NIPAL3Q6P499 PGM5P4-201ENST00000421970 445 ntBASIC18.13■□□□□ 0.49
NIPAL3Q6P499 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.13■□□□□ 0.49
NIPAL3Q6P499 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.13■□□□□ 0.49
NIPAL3Q6P499 AC133552.2-202ENST00000575694 574 ntBASIC18.13■□□□□ 0.49
NIPAL3Q6P499 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NIPAL3Q6P499 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.13■□□□□ 0.49
NIPAL3Q6P499 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NIPAL3Q6P499 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms