Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 BX119927.1-201ENST00000636596 1552 ntBASIC11.04□□□□□ -0.64
UBR4Q5T4S7 AC087742.1-201ENST00000575880 1738 ntBASIC11.04□□□□□ -0.64
UBR4Q5T4S7 AC142381.3-201ENST00000568208 1670 ntBASIC11.04□□□□□ -0.64
UBR4Q5T4S7 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC11.04□□□□□ -0.64
UBR4Q5T4S7 FIS1-203ENST00000442303 631 ntTSL 3 BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 ABBA01031661.1-201ENST00000634362 1253 ntBASIC11.04□□□□□ -0.64
UBR4Q5T4S7 AL031432.5-201ENST00000641059 760 ntBASIC11.04□□□□□ -0.64
UBR4Q5T4S7 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 SERF2-217ENST00000630046 862 ntTSL 5 BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 TREX2-204ENST00000370212 861 ntTSL 5 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 WDR53-203ENST00000429115 683 ntTSL 2 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 FOSL1P1-201ENST00000511041 816 ntBASIC11.03□□□□□ -0.64
UBR4Q5T4S7 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 AC141257.4-201ENST00000634557 245 ntBASIC11.03□□□□□ -0.64
UBR4Q5T4S7 AC136944.6-201ENST00000634818 245 ntBASIC11.03□□□□□ -0.64
UBR4Q5T4S7 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 GPX1P2-201ENST00000429271 606 ntBASIC11.03□□□□□ -0.64
UBR4Q5T4S7 KRT16P4-201ENST00000453883 522 ntBASIC11.03□□□□□ -0.64
UBR4Q5T4S7 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 AC012615.1-201ENST00000565797 1299 ntBASIC11.03□□□□□ -0.64
UBR4Q5T4S7 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 AC003102.1-202ENST00000563394 1796 ntBASIC11.03□□□□□ -0.64
UBR4Q5T4S7 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 ZNF444P1-201ENST00000559497 298 ntBASIC11.03□□□□□ -0.64
UBR4Q5T4S7 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
UBR4Q5T4S7 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC11.02□□□□□ -0.64
UBR4Q5T4S7 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC11.02□□□□□ -0.64
UBR4Q5T4S7 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
UBR4Q5T4S7 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
UBR4Q5T4S7 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
UBR4Q5T4S7 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
UBR4Q5T4S7 PGAM5P1-201ENST00000518923 814 ntBASIC11.02□□□□□ -0.64
UBR4Q5T4S7 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC11.02□□□□□ -0.64
UBR4Q5T4S7 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC11.02□□□□□ -0.64
UBR4Q5T4S7 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC11.02□□□□□ -0.64
UBR4Q5T4S7 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
UBR4Q5T4S7 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC11.02□□□□□ -0.64
UBR4Q5T4S7 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
UBR4Q5T4S7 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
UBR4Q5T4S7 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
UBR4Q5T4S7 AL645929.1-201ENST00000420084 975 ntBASIC11.02□□□□□ -0.65
UBR4Q5T4S7 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC11.02□□□□□ -0.65
UBR4Q5T4S7 AC134684.3-201ENST00000641758 218 ntBASIC11.02□□□□□ -0.65
UBR4Q5T4S7 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
UBR4Q5T4S7 KRT16P6-202ENST00000425692 1426 ntBASIC11.02□□□□□ -0.65
UBR4Q5T4S7 LINC01311-201ENST00000565162 1445 ntBASIC11.02□□□□□ -0.65
UBR4Q5T4S7 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
UBR4Q5T4S7 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms