Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RUNDC3AQ59EK9 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RUNDC3AQ59EK9 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 MYCNOS-205ENST00000641950 531 ntBASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RUNDC3AQ59EK9 TNXA-203ENST00000507684 2038 ntBASIC18.84■□□□□ 0.61
RUNDC3AQ59EK9 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
RUNDC3AQ59EK9 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RUNDC3AQ59EK9 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.84■□□□□ 0.61
RUNDC3AQ59EK9 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.84■□□□□ 0.61
RUNDC3AQ59EK9 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
RUNDC3AQ59EK9 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
RUNDC3AQ59EK9 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.84■□□□□ 0.61
RUNDC3AQ59EK9 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.84■□□□□ 0.61
RUNDC3AQ59EK9 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.84■□□□□ 0.61
RUNDC3AQ59EK9 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RUNDC3AQ59EK9 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RUNDC3AQ59EK9 PTBP1P-201ENST00000554374 1601 ntBASIC18.84■□□□□ 0.61
RUNDC3AQ59EK9 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
RUNDC3AQ59EK9 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.84■□□□□ 0.61
RUNDC3AQ59EK9 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RUNDC3AQ59EK9 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RUNDC3AQ59EK9 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RUNDC3AQ59EK9 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RUNDC3AQ59EK9 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.83■□□□□ 0.61
RUNDC3AQ59EK9 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
RUNDC3AQ59EK9 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.61
RUNDC3AQ59EK9 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 TERF1P5-201ENST00000477545 1207 ntBASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 AL591742.1-201ENST00000604433 565 ntBASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 Z82202.1-201ENST00000623446 1880 ntBASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.83■□□□□ 0.6
RUNDC3AQ59EK9 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 MIR638-201ENST00000385237 100 ntBASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RUNDC3AQ59EK9 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.81■□□□□ 0.6
RUNDC3AQ59EK9 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
RUNDC3AQ59EK9 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RUNDC3AQ59EK9 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RUNDC3AQ59EK9 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
RUNDC3AQ59EK9 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RUNDC3AQ59EK9 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.81■□□□□ 0.6
RUNDC3AQ59EK9 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RUNDC3AQ59EK9 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms