Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 AC142381.4-202ENST00000563973 229 ntBASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 AF201337.1-201ENST00000520239 748 ntBASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 MFF-207ENST00000409565 1548 ntTSL 2 BASIC16.5■□□□□ 0.23
PDLIM3Q53GG5 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 BCL2-203ENST00000589955 5011 ntBASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 AC092118.2-201ENST00000613495 667 ntBASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 ME2-218ENST00000640965 2476 ntTSL 5 BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM3Q53GG5 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 MIR4758-201ENST00000577688 71 ntBASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 AC073912.3-201ENST00000624414 853 ntBASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 CPT2-209ENST00000636935 803 ntTSL 5 BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 AC099778.1-201ENST00000568593 1911 ntBASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM3Q53GG5 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms