Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC23.2■■□□□ 1.3
CCDC144BQ3MJ40 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
CCDC144BQ3MJ40 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC23.19■■□□□ 1.3
CCDC144BQ3MJ40 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC144BQ3MJ40 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC144BQ3MJ40 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC144BQ3MJ40 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
CCDC144BQ3MJ40 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
CCDC144BQ3MJ40 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC144BQ3MJ40 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC23.19■■□□□ 1.3
CCDC144BQ3MJ40 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC144BQ3MJ40 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC23.18■■□□□ 1.3
CCDC144BQ3MJ40 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC144BQ3MJ40 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 AC027702.1-201ENST00000563810 1770 ntBASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 AC087633.2-202ENST00000565166 1439 ntBASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
CCDC144BQ3MJ40 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC144BQ3MJ40 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
CCDC144BQ3MJ40 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC23.15■■□□□ 1.3
CCDC144BQ3MJ40 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC144BQ3MJ40 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC144BQ3MJ40 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC23.15■■□□□ 1.3
CCDC144BQ3MJ40 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC144BQ3MJ40 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC144BQ3MJ40 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC23.15■■□□□ 1.3
CCDC144BQ3MJ40 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC144BQ3MJ40 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC23.15■■□□□ 1.3
CCDC144BQ3MJ40 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC23.15■■□□□ 1.3
CCDC144BQ3MJ40 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC144BQ3MJ40 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC144BQ3MJ40 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC144BQ3MJ40 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC144BQ3MJ40 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC23.14■■□□□ 1.29
CCDC144BQ3MJ40 ISG20-202ENST00000379224 540 ntTSL 3 BASIC23.14■■□□□ 1.29
CCDC144BQ3MJ40 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
CCDC144BQ3MJ40 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC23.14■■□□□ 1.29
CCDC144BQ3MJ40 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC23.14■■□□□ 1.29
CCDC144BQ3MJ40 SNORA78-201ENST00000459373 127 ntBASIC23.14■■□□□ 1.29
CCDC144BQ3MJ40 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC23.14■■□□□ 1.29
CCDC144BQ3MJ40 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
CCDC144BQ3MJ40 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC23.14■■□□□ 1.29
CCDC144BQ3MJ40 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC23.14■■□□□ 1.29
CCDC144BQ3MJ40 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC144BQ3MJ40 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC144BQ3MJ40 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms