Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CL1P78423 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CL1P78423 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CL1P78423 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CL1P78423 AC090192.1-201ENST00000517740 490 ntBASIC16.07■□□□□ 0.16
CX3CL1P78423 TK2-208ENST00000545043 1120 ntTSL 2 BASIC16.07■□□□□ 0.16
CX3CL1P78423 PHB2-213ENST00000546111 858 ntTSL 2 BASIC16.07■□□□□ 0.16
CX3CL1P78423 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC16.07■□□□□ 0.16
CX3CL1P78423 WT1-AS_3.1-201ENST00000613262 234 ntBASIC16.07■□□□□ 0.16
CX3CL1P78423 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CL1P78423 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CL1P78423 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CL1P78423 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CL1P78423 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC16.07■□□□□ 0.16
CX3CL1P78423 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CL1P78423 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CL1P78423 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CX3CL1P78423 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CL1P78423 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CL1P78423 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CX3CL1P78423 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.06■□□□□ 0.16
CX3CL1P78423 AIRN-201ENST00000601203 4374 ntBASIC16.06■□□□□ 0.16
CX3CL1P78423 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CL1P78423 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC16.06■□□□□ 0.16
CX3CL1P78423 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CL1P78423 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CL1P78423 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CL1P78423 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CL1P78423 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CL1P78423 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CX3CL1P78423 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CL1P78423 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CL1P78423 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC16.06■□□□□ 0.16
CX3CL1P78423 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CL1P78423 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC16.06■□□□□ 0.16
CX3CL1P78423 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CX3CL1P78423 GPX1P1-201ENST00000388829 606 ntBASIC16.06■□□□□ 0.16
CX3CL1P78423 LSM12P1-201ENST00000411836 588 ntBASIC16.06■□□□□ 0.16
CX3CL1P78423 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC16.06■□□□□ 0.16
CX3CL1P78423 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC16.06■□□□□ 0.16
CX3CL1P78423 MAP2K4P1-201ENST00000438453 1195 ntBASIC16.06■□□□□ 0.16
CX3CL1P78423 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC16.06■□□□□ 0.16
CX3CL1P78423 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC16.06■□□□□ 0.16
CX3CL1P78423 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC16.06■□□□□ 0.16
CX3CL1P78423 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CL1P78423 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CL1P78423 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CL1P78423 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CX3CL1P78423 AFG3L1P-217ENST00000557444 2447 ntBASIC16.06■□□□□ 0.16
CX3CL1P78423 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CL1P78423 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CL1P78423 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CL1P78423 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CX3CL1P78423 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CL1P78423 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CL1P78423 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CL1P78423 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC16.05■□□□□ 0.16
CX3CL1P78423 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CL1P78423 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CL1P78423 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CL1P78423 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CL1P78423 KRT17P1-201ENST00000399211 1546 ntBASIC16.05■□□□□ 0.16
CX3CL1P78423 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CL1P78423 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
CX3CL1P78423 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CL1P78423 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CL1P78423 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CL1P78423 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CX3CL1P78423 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CL1P78423 BX276092.2-201ENST00000417668 665 ntBASIC16.05■□□□□ 0.16
CX3CL1P78423 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC16.05■□□□□ 0.16
CX3CL1P78423 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
CX3CL1P78423 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC16.05■□□□□ 0.16
CX3CL1P78423 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CL1P78423 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC16.05■□□□□ 0.16
CX3CL1P78423 GXYLT1P5-201ENST00000614548 1189 ntBASIC16.05■□□□□ 0.16
CX3CL1P78423 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC16.05■□□□□ 0.16
CX3CL1P78423 MARS-234ENST00000630571 216 ntTSL 5 BASIC16.05■□□□□ 0.16
CX3CL1P78423 MARS-235ENST00000630803 183 ntTSL 3 BASIC16.05■□□□□ 0.16
CX3CL1P78423 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC16.05■□□□□ 0.16
CX3CL1P78423 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CL1P78423 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CL1P78423 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC16.05■□□□□ 0.16
CX3CL1P78423 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC16.05■□□□□ 0.16
CX3CL1P78423 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CL1P78423 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CL1P78423 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC16.04■□□□□ 0.16
CX3CL1P78423 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC16.04■□□□□ 0.16
CX3CL1P78423 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC16.04■□□□□ 0.16
CX3CL1P78423 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CL1P78423 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CL1P78423 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CL1P78423 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC16.04■□□□□ 0.16
CX3CL1P78423 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CL1P78423 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CL1P78423 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CL1P78423 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC16.04■□□□□ 0.16
CX3CL1P78423 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
CX3CL1P78423 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
CX3CL1P78423 SLC29A4P1-201ENST00000398760 971 ntBASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms