Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 POM121L13P-201ENST00000422362 380 ntBASIC19.12■□□□□ 0.65
VSX2P58304 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
VSX2P58304 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.12■□□□□ 0.65
VSX2P58304 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.12■□□□□ 0.65
VSX2P58304 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.12■□□□□ 0.65
VSX2P58304 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.12■□□□□ 0.65
VSX2P58304 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.12■□□□□ 0.65
VSX2P58304 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.12■□□□□ 0.65
VSX2P58304 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VSX2P58304 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.12■□□□□ 0.65
VSX2P58304 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
VSX2P58304 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.12■□□□□ 0.65
VSX2P58304 AC020907.5-201ENST00000624372 1936 ntBASIC19.12■□□□□ 0.65
VSX2P58304 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
VSX2P58304 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.11■□□□□ 0.65
VSX2P58304 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.11■□□□□ 0.65
VSX2P58304 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VSX2P58304 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VSX2P58304 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VSX2P58304 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
VSX2P58304 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.11■□□□□ 0.65
VSX2P58304 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VSX2P58304 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VSX2P58304 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VSX2P58304 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
VSX2P58304 KRT8P17-201ENST00000453110 1448 ntBASIC19.11■□□□□ 0.65
VSX2P58304 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VSX2P58304 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VSX2P58304 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VSX2P58304 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.11■□□□□ 0.65
VSX2P58304 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.11■□□□□ 0.65
VSX2P58304 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.11■□□□□ 0.65
VSX2P58304 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VSX2P58304 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VSX2P58304 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VSX2P58304 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VSX2P58304 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VSX2P58304 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
VSX2P58304 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
VSX2P58304 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
VSX2P58304 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.1■□□□□ 0.65
VSX2P58304 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.1■□□□□ 0.65
VSX2P58304 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
VSX2P58304 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
VSX2P58304 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VSX2P58304 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.1■□□□□ 0.65
VSX2P58304 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.1■□□□□ 0.65
VSX2P58304 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.1■□□□□ 0.65
VSX2P58304 AC233263.1-201ENST00000578059 224 ntBASIC19.1■□□□□ 0.65
VSX2P58304 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VSX2P58304 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
VSX2P58304 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VSX2P58304 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.1■□□□□ 0.65
VSX2P58304 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.1■□□□□ 0.65
VSX2P58304 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.1■□□□□ 0.65
VSX2P58304 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VSX2P58304 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.09■□□□□ 0.65
VSX2P58304 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.09■□□□□ 0.65
VSX2P58304 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VSX2P58304 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VSX2P58304 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VSX2P58304 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.09■□□□□ 0.65
VSX2P58304 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VSX2P58304 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.09■□□□□ 0.65
VSX2P58304 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.09■□□□□ 0.65
VSX2P58304 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.09■□□□□ 0.65
VSX2P58304 AC069544.1-201ENST00000609399 999 ntBASIC19.09■□□□□ 0.65
VSX2P58304 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.09■□□□□ 0.65
VSX2P58304 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.09■□□□□ 0.65
VSX2P58304 FEM1AP1-201ENST00000431297 1995 ntBASIC19.09■□□□□ 0.65
VSX2P58304 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VSX2P58304 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VSX2P58304 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VSX2P58304 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
VSX2P58304 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VSX2P58304 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
VSX2P58304 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
VSX2P58304 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VSX2P58304 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
VSX2P58304 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
VSX2P58304 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.08■□□□□ 0.64
VSX2P58304 RPS2P52-201ENST00000469610 820 ntBASIC19.08■□□□□ 0.64
VSX2P58304 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VSX2P58304 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.08■□□□□ 0.64
VSX2P58304 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.08■□□□□ 0.64
VSX2P58304 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.08■□□□□ 0.64
VSX2P58304 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.08■□□□□ 0.64
VSX2P58304 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.08■□□□□ 0.64
VSX2P58304 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VSX2P58304 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.08■□□□□ 0.64
VSX2P58304 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VSX2P58304 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VSX2P58304 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
VSX2P58304 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VSX2P58304 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
VSX2P58304 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VSX2P58304 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.07■□□□□ 0.64
VSX2P58304 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VSX2P58304 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VSX2P58304 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms