Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC27.84■■■□□ 2.05
MSH6P52701 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC27.84■■■□□ 2.05
MSH6P52701 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
MSH6P52701 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
MSH6P52701 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
MSH6P52701 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC27.84■■■□□ 2.05
MSH6P52701 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
MSH6P52701 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC27.84■■■□□ 2.05
MSH6P52701 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC27.84■■■□□ 2.05
MSH6P52701 COX11P1-201ENST00000489116 835 ntBASIC27.84■■■□□ 2.05
MSH6P52701 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC27.84■■■□□ 2.05
MSH6P52701 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
MSH6P52701 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC27.83■■■□□ 2.05
MSH6P52701 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC27.83■■■□□ 2.05
MSH6P52701 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC27.83■■■□□ 2.05
MSH6P52701 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC27.83■■■□□ 2.05
MSH6P52701 FDX2-206ENST00000492239 773 ntTSL 2 BASIC27.83■■■□□ 2.05
MSH6P52701 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC27.83■■■□□ 2.05
MSH6P52701 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC27.83■■■□□ 2.05
MSH6P52701 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC27.83■■■□□ 2.05
MSH6P52701 AL691432.3-201ENST00000621860 400 ntBASIC27.83■■■□□ 2.05
MSH6P52701 KRT8P36-201ENST00000489121 1440 ntBASIC27.83■■■□□ 2.05
MSH6P52701 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC27.83■■■□□ 2.05
MSH6P52701 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC27.83■■■□□ 2.05
MSH6P52701 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC27.83■■■□□ 2.05
MSH6P52701 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC27.82■■■□□ 2.04
MSH6P52701 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
MSH6P52701 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
MSH6P52701 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
MSH6P52701 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC27.82■■■□□ 2.04
MSH6P52701 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
MSH6P52701 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC27.82■■■□□ 2.04
MSH6P52701 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC27.82■■■□□ 2.04
MSH6P52701 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
MSH6P52701 AC004980.1-204ENST00000429707 299 ntBASIC27.82■■■□□ 2.04
MSH6P52701 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
MSH6P52701 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
MSH6P52701 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC27.81■■■□□ 2.04
MSH6P52701 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
MSH6P52701 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
MSH6P52701 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC27.81■■■□□ 2.04
MSH6P52701 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC27.81■■■□□ 2.04
MSH6P52701 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
MSH6P52701 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
MSH6P52701 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC27.81■■■□□ 2.04
MSH6P52701 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC27.81■■■□□ 2.04
MSH6P52701 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
MSH6P52701 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC27.81■■■□□ 2.04
MSH6P52701 HIST1H2APS4-201ENST00000362070 348 ntBASIC27.81■■■□□ 2.04
MSH6P52701 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC27.81■■■□□ 2.04
MSH6P52701 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC27.81■■■□□ 2.04
MSH6P52701 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
MSH6P52701 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC27.81■■■□□ 2.04
MSH6P52701 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
MSH6P52701 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC27.8■■■□□ 2.04
MSH6P52701 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
MSH6P52701 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC27.8■■■□□ 2.04
MSH6P52701 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
MSH6P52701 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC27.8■■■□□ 2.04
MSH6P52701 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
MSH6P52701 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC27.8■■■□□ 2.04
MSH6P52701 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
MSH6P52701 BET1L-202ENST00000332865 533 ntTSL 5 BASIC27.8■■■□□ 2.04
MSH6P52701 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC27.8■■■□□ 2.04
MSH6P52701 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC27.8■■■□□ 2.04
MSH6P52701 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
MSH6P52701 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC27.8■■■□□ 2.04
MSH6P52701 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC27.8■■■□□ 2.04
MSH6P52701 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC27.8■■■□□ 2.04
MSH6P52701 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
MSH6P52701 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
MSH6P52701 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
MSH6P52701 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
MSH6P52701 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC27.8■■■□□ 2.04
MSH6P52701 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC27.79■■■□□ 2.04
MSH6P52701 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
MSH6P52701 HLA-G-202ENST00000376815 851 ntBASIC27.79■■■□□ 2.04
MSH6P52701 HLA-G-203ENST00000376818 1127 ntBASIC27.79■■■□□ 2.04
MSH6P52701 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC27.79■■■□□ 2.04
MSH6P52701 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC27.79■■■□□ 2.04
MSH6P52701 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC27.79■■■□□ 2.04
MSH6P52701 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC27.79■■■□□ 2.04
MSH6P52701 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC27.79■■■□□ 2.04
MSH6P52701 NDUFV2-AS1-203ENST00000608008 779 ntBASIC27.79■■■□□ 2.04
MSH6P52701 AC116562.4-202ENST00000641738 218 ntBASIC27.79■■■□□ 2.04
MSH6P52701 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
MSH6P52701 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
MSH6P52701 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
MSH6P52701 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
MSH6P52701 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC27.79■■■□□ 2.04
MSH6P52701 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC27.78■■■□□ 2.04
MSH6P52701 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
MSH6P52701 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
MSH6P52701 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC27.78■■■□□ 2.04
MSH6P52701 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC27.78■■■□□ 2.04
MSH6P52701 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
MSH6P52701 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
MSH6P52701 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
MSH6P52701 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC27.78■■■□□ 2.04
MSH6P52701 CD70-202ENST00000423145 881 ntTSL 2 BASIC27.78■■■□□ 2.04
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms