Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX3P48380 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX3P48380 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX3P48380 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RFX3P48380 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.73■□□□□ 0.59
RFX3P48380 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX3P48380 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX3P48380 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX3P48380 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX3P48380 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RFX3P48380 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.73■□□□□ 0.59
RFX3P48380 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
RFX3P48380 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX3P48380 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RFX3P48380 LSM12P1-201ENST00000411836 588 ntBASIC18.73■□□□□ 0.59
RFX3P48380 AC083906.2-201ENST00000511578 360 ntBASIC18.73■□□□□ 0.59
RFX3P48380 AC133552.2-202ENST00000575694 574 ntBASIC18.73■□□□□ 0.59
RFX3P48380 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.73■□□□□ 0.59
RFX3P48380 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.73■□□□□ 0.59
RFX3P48380 AL121832.2-201ENST00000610979 668 ntBASIC18.73■□□□□ 0.59
RFX3P48380 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.73■□□□□ 0.59
RFX3P48380 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.73■□□□□ 0.59
RFX3P48380 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.73■□□□□ 0.59
RFX3P48380 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX3P48380 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.73■□□□□ 0.59
RFX3P48380 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.73■□□□□ 0.59
RFX3P48380 KRT17P1-201ENST00000399211 1546 ntBASIC18.73■□□□□ 0.59
RFX3P48380 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX3P48380 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX3P48380 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
RFX3P48380 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFX3P48380 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFX3P48380 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RFX3P48380 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.72■□□□□ 0.59
RFX3P48380 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.72■□□□□ 0.59
RFX3P48380 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
RFX3P48380 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
RFX3P48380 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RFX3P48380 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFX3P48380 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFX3P48380 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RFX3P48380 BX276092.2-201ENST00000417668 665 ntBASIC18.72■□□□□ 0.59
RFX3P48380 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFX3P48380 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.72■□□□□ 0.59
RFX3P48380 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.72■□□□□ 0.59
RFX3P48380 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFX3P48380 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.72■□□□□ 0.59
RFX3P48380 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.72■□□□□ 0.59
RFX3P48380 AL589743.5-201ENST00000616611 1050 ntBASIC18.72■□□□□ 0.59
RFX3P48380 AC105020.6-201ENST00000621523 1217 ntBASIC18.72■□□□□ 0.59
RFX3P48380 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFX3P48380 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RFX3P48380 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RFX3P48380 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFX3P48380 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.72■□□□□ 0.59
RFX3P48380 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFX3P48380 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
RFX3P48380 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
RFX3P48380 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
RFX3P48380 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.71■□□□□ 0.59
RFX3P48380 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
RFX3P48380 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.71■□□□□ 0.59
RFX3P48380 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
RFX3P48380 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RFX3P48380 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RFX3P48380 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.71■□□□□ 0.59
RFX3P48380 AL512625.2-201ENST00000417533 625 ntBASIC18.71■□□□□ 0.59
RFX3P48380 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.71■□□□□ 0.59
RFX3P48380 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.71■□□□□ 0.59
RFX3P48380 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.71■□□□□ 0.59
RFX3P48380 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RFX3P48380 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.71■□□□□ 0.59
RFX3P48380 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
RFX3P48380 AC007952.6-201ENST00000573168 2673 ntBASIC18.71■□□□□ 0.59
RFX3P48380 AC003957.1-201ENST00000625108 2673 ntBASIC18.71■□□□□ 0.59
RFX3P48380 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RFX3P48380 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RFX3P48380 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RFX3P48380 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.71■□□□□ 0.59
RFX3P48380 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
RFX3P48380 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.71■□□□□ 0.59
RFX3P48380 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.58
RFX3P48380 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
RFX3P48380 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
RFX3P48380 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RFX3P48380 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.7■□□□□ 0.58
RFX3P48380 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX3P48380 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RFX3P48380 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX3P48380 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX3P48380 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX3P48380 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RFX3P48380 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.7■□□□□ 0.58
RFX3P48380 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
RFX3P48380 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX3P48380 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX3P48380 SLC29A4P1-201ENST00000398760 971 ntBASIC18.7■□□□□ 0.58
RFX3P48380 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RFX3P48380 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.7■□□□□ 0.58
RFX3P48380 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms