Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
MSH3P20585 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH3P20585 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH3P20585 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH3P20585 HLA-G-202ENST00000376815 851 ntBASIC19.87■□□□□ 0.77
MSH3P20585 HLA-G-203ENST00000376818 1127 ntBASIC19.87■□□□□ 0.77
MSH3P20585 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.87■□□□□ 0.77
MSH3P20585 AL390719.1-204ENST00000412397 1219 ntBASIC19.87■□□□□ 0.77
MSH3P20585 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH3P20585 RNA5SP413-201ENST00000516373 109 ntBASIC19.87■□□□□ 0.77
MSH3P20585 AC023632.3-201ENST00000521633 145 ntBASIC19.87■□□□□ 0.77
MSH3P20585 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
MSH3P20585 AC060766.5-201ENST00000590539 871 ntBASIC19.87■□□□□ 0.77
MSH3P20585 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH3P20585 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.87■□□□□ 0.77
MSH3P20585 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.87■□□□□ 0.77
MSH3P20585 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
MSH3P20585 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH3P20585 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH3P20585 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH3P20585 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.87■□□□□ 0.77
MSH3P20585 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
MSH3P20585 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
MSH3P20585 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH3P20585 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
MSH3P20585 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH3P20585 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
MSH3P20585 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.86■□□□□ 0.77
MSH3P20585 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.86■□□□□ 0.77
MSH3P20585 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH3P20585 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
MSH3P20585 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.86■□□□□ 0.77
MSH3P20585 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.86■□□□□ 0.77
MSH3P20585 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.86■□□□□ 0.77
MSH3P20585 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.86■□□□□ 0.77
MSH3P20585 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.86■□□□□ 0.77
MSH3P20585 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.86■□□□□ 0.77
MSH3P20585 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.85■□□□□ 0.77
MSH3P20585 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 KRT8P20-201ENST00000423953 1409 ntBASIC19.85■□□□□ 0.77
MSH3P20585 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.85■□□□□ 0.77
MSH3P20585 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
MSH3P20585 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.85■□□□□ 0.77
MSH3P20585 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.85■□□□□ 0.77
MSH3P20585 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.85■□□□□ 0.77
MSH3P20585 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.85■□□□□ 0.77
MSH3P20585 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.85■□□□□ 0.77
MSH3P20585 PNMA6B-201ENST00000538162 1200 ntBASIC19.85■□□□□ 0.77
MSH3P20585 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 AL031963.3-201ENST00000606441 850 ntBASIC19.85■□□□□ 0.77
MSH3P20585 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.85■□□□□ 0.77
MSH3P20585 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
MSH3P20585 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
MSH3P20585 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.85■□□□□ 0.77
MSH3P20585 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH3P20585 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
MSH3P20585 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.85■□□□□ 0.77
MSH3P20585 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 PTBP1P-201ENST00000554374 1601 ntBASIC19.84■□□□□ 0.77
MSH3P20585 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.84■□□□□ 0.77
MSH3P20585 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.84■□□□□ 0.77
MSH3P20585 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.84■□□□□ 0.77
MSH3P20585 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.84■□□□□ 0.77
MSH3P20585 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC19.84■□□□□ 0.77
MSH3P20585 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.84■□□□□ 0.77
MSH3P20585 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.84■□□□□ 0.77
MSH3P20585 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.84■□□□□ 0.77
MSH3P20585 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.84■□□□□ 0.77
MSH3P20585 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms