Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ATF4P18848 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATF4P18848 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC16.65■□□□□ 0.26
ATF4P18848 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATF4P18848 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATF4P18848 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
ATF4P18848 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
ATF4P18848 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC16.64■□□□□ 0.26
ATF4P18848 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATF4P18848 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ATF4P18848 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.64■□□□□ 0.25
ATF4P18848 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
ATF4P18848 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATF4P18848 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATF4P18848 VGF-203ENST00000611537 1622 ntTSL 5 BASIC16.64■□□□□ 0.25
ATF4P18848 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
ATF4P18848 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATF4P18848 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.64■□□□□ 0.25
ATF4P18848 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ATF4P18848 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC16.64■□□□□ 0.25
ATF4P18848 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATF4P18848 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATF4P18848 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ATF4P18848 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.64■□□□□ 0.25
ATF4P18848 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATF4P18848 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATF4P18848 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATF4P18848 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC16.64■□□□□ 0.25
ATF4P18848 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ATF4P18848 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ATF4P18848 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC16.64■□□□□ 0.25
ATF4P18848 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATF4P18848 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ATF4P18848 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATF4P18848 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ATF4P18848 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATF4P18848 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATF4P18848 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.63■□□□□ 0.25
ATF4P18848 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.63■□□□□ 0.25
ATF4P18848 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.63■□□□□ 0.25
ATF4P18848 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATF4P18848 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATF4P18848 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
ATF4P18848 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
ATF4P18848 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
ATF4P18848 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC16.63■□□□□ 0.25
ATF4P18848 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC16.63■□□□□ 0.25
ATF4P18848 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATF4P18848 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATF4P18848 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATF4P18848 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
ATF4P18848 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATF4P18848 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATF4P18848 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
ATF4P18848 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
ATF4P18848 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATF4P18848 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
ATF4P18848 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.63■□□□□ 0.25
ATF4P18848 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
ATF4P18848 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ATF4P18848 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
ATF4P18848 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
ATF4P18848 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
ATF4P18848 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATF4P18848 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.62■□□□□ 0.25
ATF4P18848 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATF4P18848 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATF4P18848 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATF4P18848 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ATF4P18848 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.62■□□□□ 0.25
ATF4P18848 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATF4P18848 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATF4P18848 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ATF4P18848 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ATF4P18848 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ATF4P18848 AL512631.2-201ENST00000604634 923 ntBASIC16.62■□□□□ 0.25
ATF4P18848 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
ATF4P18848 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
ATF4P18848 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATF4P18848 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
ATF4P18848 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATF4P18848 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ATF4P18848 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATF4P18848 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATF4P18848 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATF4P18848 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.62■□□□□ 0.25
ATF4P18848 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.62■□□□□ 0.25
ATF4P18848 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATF4P18848 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
ATF4P18848 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC16.61■□□□□ 0.25
ATF4P18848 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATF4P18848 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
ATF4P18848 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
ATF4P18848 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
ATF4P18848 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATF4P18848 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATF4P18848 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC16.61■□□□□ 0.25
ATF4P18848 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ATF4P18848 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
ATF4P18848 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms