Protein–RNA interactions for Protein: P07949

RET, Proto-oncogene tyrosine-protein kinase receptor Ret, humanhuman

Predictions only

Length 1,114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETP07949 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.18■□□□□ 0.82
RETP07949 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
RETP07949 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
RETP07949 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
RETP07949 AC073195.1-201ENST00000607241 877 ntBASIC20.18■□□□□ 0.82
RETP07949 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RETP07949 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RETP07949 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
RETP07949 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RETP07949 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RETP07949 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
RETP07949 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
RETP07949 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RETP07949 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.17■□□□□ 0.82
RETP07949 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
RETP07949 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RETP07949 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RETP07949 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RETP07949 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
RETP07949 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RETP07949 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.17■□□□□ 0.82
RETP07949 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.17■□□□□ 0.82
RETP07949 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
RETP07949 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RETP07949 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.17■□□□□ 0.82
RETP07949 NTF6B-201ENST00000591913 560 ntBASIC20.17■□□□□ 0.82
RETP07949 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.17■□□□□ 0.82
RETP07949 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.17■□□□□ 0.82
RETP07949 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RETP07949 KRT18P22-201ENST00000402024 1347 ntBASIC20.17■□□□□ 0.82
RETP07949 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RETP07949 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
RETP07949 KRT8P9-201ENST00000558927 1449 ntBASIC20.17■□□□□ 0.82
RETP07949 AF106564.1-201ENST00000607058 2553 ntBASIC20.17■□□□□ 0.82
RETP07949 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RETP07949 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RETP07949 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RETP07949 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RETP07949 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
RETP07949 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.16■□□□□ 0.82
RETP07949 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RETP07949 TERF1P1-201ENST00000311003 1181 ntBASIC20.16■□□□□ 0.82
RETP07949 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
RETP07949 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RETP07949 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.16■□□□□ 0.82
RETP07949 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RETP07949 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.16■□□□□ 0.82
RETP07949 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.16■□□□□ 0.82
RETP07949 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.16■□□□□ 0.82
RETP07949 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RETP07949 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.16■□□□□ 0.82
RETP07949 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RETP07949 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.16■□□□□ 0.82
RETP07949 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RETP07949 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RETP07949 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.16■□□□□ 0.82
RETP07949 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
RETP07949 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RETP07949 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
RETP07949 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.15■□□□□ 0.82
RETP07949 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RETP07949 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
RETP07949 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RETP07949 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RETP07949 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.15■□□□□ 0.82
RETP07949 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RETP07949 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.15■□□□□ 0.82
RETP07949 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.15■□□□□ 0.82
RETP07949 AC087388.1-201ENST00000571370 1112 ntBASIC20.15■□□□□ 0.82
RETP07949 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.15■□□□□ 0.82
RETP07949 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.15■□□□□ 0.82
RETP07949 AL031963.3-201ENST00000606441 850 ntBASIC20.15■□□□□ 0.82
RETP07949 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.15■□□□□ 0.82
RETP07949 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.15■□□□□ 0.82
RETP07949 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.15■□□□□ 0.82
RETP07949 AC079598.2-202ENST00000546624 1451 ntBASIC20.15■□□□□ 0.82
RETP07949 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RETP07949 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.15■□□□□ 0.82
RETP07949 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RETP07949 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.82
RETP07949 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.14■□□□□ 0.82
RETP07949 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
RETP07949 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.14■□□□□ 0.81
RETP07949 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RETP07949 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RETP07949 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.14■□□□□ 0.81
RETP07949 DUX4L26-201ENST00000489078 1255 ntBASIC20.14■□□□□ 0.81
RETP07949 NUDT16P1-203ENST00000513809 620 ntBASIC20.14■□□□□ 0.81
RETP07949 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.14■□□□□ 0.81
RETP07949 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.14■□□□□ 0.81
RETP07949 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RETP07949 NAPSB-206ENST00000562112 1266 ntBASIC20.14■□□□□ 0.81
RETP07949 AP000525.1-201ENST00000608286 694 ntBASIC20.14■□□□□ 0.81
RETP07949 AL121829.2-201ENST00000620908 328 ntBASIC20.14■□□□□ 0.81
RETP07949 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.14■□□□□ 0.81
RETP07949 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.13■□□□□ 0.81
RETP07949 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.13■□□□□ 0.81
RETP07949 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RETP07949 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RETP07949 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms