Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC26.55■■□□□ 1.84
COL3A1P02461 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
COL3A1P02461 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC26.55■■□□□ 1.84
COL3A1P02461 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC26.55■■□□□ 1.84
COL3A1P02461 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL3A1P02461 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC26.54■■□□□ 1.84
COL3A1P02461 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC26.54■■□□□ 1.84
COL3A1P02461 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL3A1P02461 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC26.54■■□□□ 1.84
COL3A1P02461 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL3A1P02461 MOK-225ENST00000522867 1883 ntTSL 5 BASIC26.54■■□□□ 1.84
COL3A1P02461 PHGDH-210ENST00000641115 1638 ntBASIC26.54■■□□□ 1.84
COL3A1P02461 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL3A1P02461 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL3A1P02461 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL3A1P02461 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL3A1P02461 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL3A1P02461 MDFI-202ENST00000373050 809 ntTSL 2 BASIC26.54■■□□□ 1.84
COL3A1P02461 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC26.54■■□□□ 1.84
COL3A1P02461 AC012618.2-201ENST00000428058 849 ntBASIC26.54■■□□□ 1.84
COL3A1P02461 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
COL3A1P02461 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL3A1P02461 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL3A1P02461 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
COL3A1P02461 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
COL3A1P02461 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC26.53■■□□□ 1.84
COL3A1P02461 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL3A1P02461 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
COL3A1P02461 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL3A1P02461 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL3A1P02461 BAALC-201ENST00000297574 801 ntTSL 3 BASIC26.53■■□□□ 1.84
COL3A1P02461 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC26.53■■□□□ 1.84
COL3A1P02461 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC26.53■■□□□ 1.84
COL3A1P02461 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC26.53■■□□□ 1.84
COL3A1P02461 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC26.53■■□□□ 1.84
COL3A1P02461 SPIB-206ENST00000596074 847 ntTSL 2 BASIC26.53■■□□□ 1.84
COL3A1P02461 AC110285.5-201ENST00000611501 352 ntBASIC26.53■■□□□ 1.84
COL3A1P02461 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL3A1P02461 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL3A1P02461 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC26.52■■□□□ 1.84
COL3A1P02461 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
COL3A1P02461 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC26.52■■□□□ 1.84
COL3A1P02461 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC26.52■■□□□ 1.84
COL3A1P02461 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC26.52■■□□□ 1.84
COL3A1P02461 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC26.52■■□□□ 1.84
COL3A1P02461 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC26.52■■□□□ 1.84
COL3A1P02461 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC26.52■■□□□ 1.84
COL3A1P02461 STK25-204ENST00000405585 1643 ntTSL 2 BASIC26.52■■□□□ 1.84
COL3A1P02461 AC018553.1-201ENST00000616682 1458 ntBASIC26.52■■□□□ 1.84
COL3A1P02461 AL157384.1-201ENST00000445995 2473 ntBASIC26.52■■□□□ 1.84
COL3A1P02461 USP48-205ENST00000421625 2818 ntTSL 2 BASIC26.52■■□□□ 1.84
COL3A1P02461 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
COL3A1P02461 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC26.52■■□□□ 1.84
COL3A1P02461 TFP1-202ENST00000475455 1573 ntBASIC26.51■■□□□ 1.83
COL3A1P02461 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC26.51■■□□□ 1.83
COL3A1P02461 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL3A1P02461 F2R-202ENST00000505600 442 ntTSL 2 BASIC26.51■■□□□ 1.83
COL3A1P02461 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
COL3A1P02461 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC26.51■■□□□ 1.83
COL3A1P02461 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC26.51■■□□□ 1.83
COL3A1P02461 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL3A1P02461 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC26.51■■□□□ 1.83
COL3A1P02461 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC26.51■■□□□ 1.83
COL3A1P02461 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC26.51■■□□□ 1.83
COL3A1P02461 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL3A1P02461 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC26.51■■□□□ 1.83
COL3A1P02461 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
COL3A1P02461 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC26.51■■□□□ 1.83
COL3A1P02461 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC26.5■■□□□ 1.83
COL3A1P02461 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
COL3A1P02461 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC26.5■■□□□ 1.83
COL3A1P02461 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC26.5■■□□□ 1.83
COL3A1P02461 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC26.5■■□□□ 1.83
COL3A1P02461 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
COL3A1P02461 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
COL3A1P02461 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC26.5■■□□□ 1.83
COL3A1P02461 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
COL3A1P02461 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
COL3A1P02461 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
COL3A1P02461 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
COL3A1P02461 NBPF21P-201ENST00000425093 1451 ntBASIC26.5■■□□□ 1.83
COL3A1P02461 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL3A1P02461 AL596275.1-201ENST00000423464 877 ntBASIC26.49■■□□□ 1.83
COL3A1P02461 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
COL3A1P02461 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL3A1P02461 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
COL3A1P02461 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
COL3A1P02461 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC26.49■■□□□ 1.83
COL3A1P02461 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC26.49■■□□□ 1.83
COL3A1P02461 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC26.49■■□□□ 1.83
COL3A1P02461 Z99916.2-201ENST00000604037 246 ntBASIC26.49■■□□□ 1.83
COL3A1P02461 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL3A1P02461 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
COL3A1P02461 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC26.49■■□□□ 1.83
COL3A1P02461 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC26.49■■□□□ 1.83
COL3A1P02461 KRT16P6-202ENST00000425692 1426 ntBASIC26.49■■□□□ 1.83
COL3A1P02461 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
COL3A1P02461 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL3A1P02461 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC26.49■■□□□ 1.83
COL3A1P02461 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC26.49■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms