Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 HLA-G-202ENST00000376815 851 ntBASIC31.37■■■□□ 2.61
PCF11O94913 HLA-G-203ENST00000376818 1127 ntBASIC31.37■■■□□ 2.61
PCF11O94913 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC31.37■■■□□ 2.61
PCF11O94913 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
PCF11O94913 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC31.37■■■□□ 2.61
PCF11O94913 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC31.37■■■□□ 2.61
PCF11O94913 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
PCF11O94913 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
PCF11O94913 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC31.36■■■□□ 2.61
PCF11O94913 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
PCF11O94913 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
PCF11O94913 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC31.36■■■□□ 2.61
PCF11O94913 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
PCF11O94913 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC31.36■■■□□ 2.61
PCF11O94913 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
PCF11O94913 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
PCF11O94913 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
PCF11O94913 KRT8P9-201ENST00000558927 1449 ntBASIC31.36■■■□□ 2.61
PCF11O94913 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
PCF11O94913 DECR2-212ENST00000627716 352 ntTSL 2 BASIC31.35■■■□□ 2.61
PCF11O94913 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC31.35■■■□□ 2.61
PCF11O94913 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
PCF11O94913 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC31.35■■■□□ 2.61
PCF11O94913 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
PCF11O94913 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC31.35■■■□□ 2.61
PCF11O94913 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC31.34■■■□□ 2.61
PCF11O94913 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC31.34■■■□□ 2.61
PCF11O94913 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
PCF11O94913 AC007225.1-201ENST00000566331 1836 ntBASIC31.34■■■□□ 2.61
PCF11O94913 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
PCF11O94913 KRT8P17-201ENST00000453110 1448 ntBASIC31.34■■■□□ 2.61
PCF11O94913 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
PCF11O94913 TPM1-226ENST00000560959 925 ntTSL 2 BASIC31.34■■■□□ 2.61
PCF11O94913 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC31.34■■■□□ 2.61
PCF11O94913 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC31.34■■■□□ 2.61
PCF11O94913 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
PCF11O94913 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
PCF11O94913 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
PCF11O94913 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC31.34■■■□□ 2.61
PCF11O94913 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC31.33■■■□□ 2.61
PCF11O94913 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC31.33■■■□□ 2.61
PCF11O94913 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC31.33■■■□□ 2.61
PCF11O94913 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC31.33■■■□□ 2.61
PCF11O94913 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC31.33■■■□□ 2.61
PCF11O94913 RBM17P1-201ENST00000453646 1190 ntBASIC31.33■■■□□ 2.61
PCF11O94913 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC31.33■■■□□ 2.61
PCF11O94913 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC31.33■■■□□ 2.61
PCF11O94913 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
PCF11O94913 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
PCF11O94913 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC31.32■■■□□ 2.61
PCF11O94913 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC31.32■■■□□ 2.6
PCF11O94913 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
PCF11O94913 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
PCF11O94913 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
PCF11O94913 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
PCF11O94913 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC31.32■■■□□ 2.6
PCF11O94913 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC31.32■■■□□ 2.6
PCF11O94913 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
PCF11O94913 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC31.31■■■□□ 2.6
PCF11O94913 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC31.31■■■□□ 2.6
PCF11O94913 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
PCF11O94913 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
PCF11O94913 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
PCF11O94913 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC31.31■■■□□ 2.6
PCF11O94913 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
PCF11O94913 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC31.3■■■□□ 2.6
PCF11O94913 YBX1P10-201ENST00000444752 975 ntBASIC31.3■■■□□ 2.6
PCF11O94913 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
PCF11O94913 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC31.3■■■□□ 2.6
PCF11O94913 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC31.3■■■□□ 2.6
PCF11O94913 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
PCF11O94913 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC31.3■■■□□ 2.6
PCF11O94913 AC116351.2-201ENST00000606540 1585 ntBASIC31.3■■■□□ 2.6
PCF11O94913 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
PCF11O94913 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
PCF11O94913 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
PCF11O94913 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC31.3■■■□□ 2.6
PCF11O94913 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC31.3■■■□□ 2.6
PCF11O94913 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
PCF11O94913 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
PCF11O94913 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
PCF11O94913 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC31.29■■■□□ 2.6
PCF11O94913 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
PCF11O94913 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
PCF11O94913 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
PCF11O94913 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
PCF11O94913 AC073195.1-201ENST00000607241 877 ntBASIC31.29■■■□□ 2.6
PCF11O94913 AC004264.1-201ENST00000608354 794 ntBASIC31.29■■■□□ 2.6
PCF11O94913 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC31.29■■■□□ 2.6
PCF11O94913 AC079598.2-202ENST00000546624 1451 ntBASIC31.29■■■□□ 2.6
PCF11O94913 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC31.28■■■□□ 2.6
PCF11O94913 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
PCF11O94913 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC31.28■■■□□ 2.6
PCF11O94913 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
PCF11O94913 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
PCF11O94913 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC31.28■■■□□ 2.6
PCF11O94913 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
PCF11O94913 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC31.28■■■□□ 2.6
PCF11O94913 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC31.28■■■□□ 2.6
PCF11O94913 KRT16P1-201ENST00000399124 1418 ntBASIC31.28■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms