Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC3O75056 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SDC3O75056 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC3O75056 AL121603.2-201ENST00000557373 2117 ntBASIC19.6■□□□□ 0.73
SDC3O75056 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.6■□□□□ 0.73
SDC3O75056 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC3O75056 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SDC3O75056 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDC3O75056 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
SDC3O75056 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDC3O75056 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.59■□□□□ 0.73
SDC3O75056 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.59■□□□□ 0.73
SDC3O75056 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
SDC3O75056 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SDC3O75056 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
SDC3O75056 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.59■□□□□ 0.73
SDC3O75056 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SDC3O75056 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
SDC3O75056 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDC3O75056 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SDC3O75056 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SDC3O75056 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SDC3O75056 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SDC3O75056 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
SDC3O75056 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SDC3O75056 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SDC3O75056 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SDC3O75056 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SDC3O75056 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SDC3O75056 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
SDC3O75056 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SDC3O75056 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SDC3O75056 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.58■□□□□ 0.72
SDC3O75056 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.58■□□□□ 0.72
SDC3O75056 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.58■□□□□ 0.72
SDC3O75056 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.58■□□□□ 0.72
SDC3O75056 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.58■□□□□ 0.72
SDC3O75056 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.58■□□□□ 0.72
SDC3O75056 AL353708.3-201ENST00000610272 989 ntBASIC19.58■□□□□ 0.72
SDC3O75056 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.58■□□□□ 0.72
SDC3O75056 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.58■□□□□ 0.72
SDC3O75056 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.58■□□□□ 0.72
SDC3O75056 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.58■□□□□ 0.72
SDC3O75056 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.72
SDC3O75056 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SDC3O75056 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.72
SDC3O75056 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
SDC3O75056 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
SDC3O75056 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.58■□□□□ 0.72
SDC3O75056 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SDC3O75056 FEM1AP4-201ENST00000443167 1987 ntBASIC19.57■□□□□ 0.72
SDC3O75056 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDC3O75056 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.57■□□□□ 0.72
SDC3O75056 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.57■□□□□ 0.72
SDC3O75056 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.57■□□□□ 0.72
SDC3O75056 HLA-G-202ENST00000376815 851 ntBASIC19.57■□□□□ 0.72
SDC3O75056 HLA-G-203ENST00000376818 1127 ntBASIC19.57■□□□□ 0.72
SDC3O75056 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SDC3O75056 AL353807.1-201ENST00000427475 662 ntBASIC19.57■□□□□ 0.72
SDC3O75056 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.57■□□□□ 0.72
SDC3O75056 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.57■□□□□ 0.72
SDC3O75056 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.57■□□□□ 0.72
SDC3O75056 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.57■□□□□ 0.72
SDC3O75056 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDC3O75056 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.57■□□□□ 0.72
SDC3O75056 PTBP1P-201ENST00000554374 1601 ntBASIC19.57■□□□□ 0.72
SDC3O75056 PLK5-205ENST00000642079 1969 ntBASIC19.57■□□□□ 0.72
SDC3O75056 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SDC3O75056 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDC3O75056 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.56■□□□□ 0.72
SDC3O75056 PKD1P6-201ENST00000343738 4769 ntBASIC19.56■□□□□ 0.72
SDC3O75056 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SDC3O75056 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.56■□□□□ 0.72
SDC3O75056 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SDC3O75056 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.56■□□□□ 0.72
SDC3O75056 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SDC3O75056 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SDC3O75056 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SDC3O75056 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SDC3O75056 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SDC3O75056 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.56■□□□□ 0.72
SDC3O75056 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.56■□□□□ 0.72
SDC3O75056 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.56■□□□□ 0.72
SDC3O75056 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.56■□□□□ 0.72
SDC3O75056 AC004264.1-201ENST00000608354 794 ntBASIC19.56■□□□□ 0.72
SDC3O75056 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.56■□□□□ 0.72
SDC3O75056 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SDC3O75056 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SDC3O75056 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.56■□□□□ 0.72
SDC3O75056 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SDC3O75056 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
SDC3O75056 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SDC3O75056 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.56■□□□□ 0.72
SDC3O75056 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.55■□□□□ 0.72
SDC3O75056 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SDC3O75056 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SDC3O75056 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SDC3O75056 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SDC3O75056 AP002982.1-201ENST00000492365 877 ntBASIC19.55■□□□□ 0.72
SDC3O75056 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms