Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
NPHP1O15259 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
NPHP1O15259 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC25.2■■□□□ 1.62
NPHP1O15259 TREX2-204ENST00000370212 861 ntTSL 5 BASIC25.2■■□□□ 1.62
NPHP1O15259 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
NPHP1O15259 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.62
NPHP1O15259 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC25.2■■□□□ 1.62
NPHP1O15259 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC25.2■■□□□ 1.62
NPHP1O15259 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
NPHP1O15259 AC145285.6-201ENST00000604632 637 ntBASIC25.2■■□□□ 1.62
NPHP1O15259 AL031963.3-201ENST00000606441 850 ntBASIC25.2■■□□□ 1.62
NPHP1O15259 AL590326.2-201ENST00000625139 305 ntBASIC25.2■■□□□ 1.62
NPHP1O15259 AC092865.7-201ENST00000641832 219 ntBASIC25.2■■□□□ 1.62
NPHP1O15259 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
NPHP1O15259 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
NPHP1O15259 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
NPHP1O15259 TUB-203ENST00000534099 1759 ntTSL 2 BASIC25.2■■□□□ 1.62
NPHP1O15259 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC25.2■■□□□ 1.62
NPHP1O15259 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC25.2■■□□□ 1.62
NPHP1O15259 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
NPHP1O15259 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.62
NPHP1O15259 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC25.2■■□□□ 1.62
NPHP1O15259 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC25.19■■□□□ 1.62
NPHP1O15259 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
NPHP1O15259 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
NPHP1O15259 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
NPHP1O15259 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
NPHP1O15259 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC25.19■■□□□ 1.62
NPHP1O15259 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC25.19■■□□□ 1.62
NPHP1O15259 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC25.19■■□□□ 1.62
NPHP1O15259 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC25.19■■□□□ 1.62
NPHP1O15259 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC25.19■■□□□ 1.62
NPHP1O15259 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
NPHP1O15259 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
NPHP1O15259 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
NPHP1O15259 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
NPHP1O15259 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
NPHP1O15259 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
NPHP1O15259 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC25.18■■□□□ 1.62
NPHP1O15259 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
NPHP1O15259 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
NPHP1O15259 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
NPHP1O15259 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
NPHP1O15259 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
NPHP1O15259 HLA-G-202ENST00000376815 851 ntBASIC25.18■■□□□ 1.62
NPHP1O15259 HLA-G-203ENST00000376818 1127 ntBASIC25.18■■□□□ 1.62
NPHP1O15259 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC25.18■■□□□ 1.62
NPHP1O15259 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
NPHP1O15259 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC25.18■■□□□ 1.62
NPHP1O15259 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
NPHP1O15259 REXO1L10P-201ENST00000615707 1290 ntBASIC25.18■■□□□ 1.62
NPHP1O15259 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC25.18■■□□□ 1.62
NPHP1O15259 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
NPHP1O15259 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
NPHP1O15259 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
NPHP1O15259 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
NPHP1O15259 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC25.17■■□□□ 1.62
NPHP1O15259 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
NPHP1O15259 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
NPHP1O15259 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC25.17■■□□□ 1.62
NPHP1O15259 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC25.17■■□□□ 1.62
NPHP1O15259 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
NPHP1O15259 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC25.17■■□□□ 1.62
NPHP1O15259 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC25.17■■□□□ 1.62
NPHP1O15259 CR392000.1-201ENST00000624770 1228 ntBASIC25.17■■□□□ 1.62
NPHP1O15259 MIR2861-201ENST00000636310 90 ntBASIC25.17■■□□□ 1.62
NPHP1O15259 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
NPHP1O15259 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
NPHP1O15259 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
NPHP1O15259 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
NPHP1O15259 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
NPHP1O15259 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC25.17■■□□□ 1.62
NPHP1O15259 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
NPHP1O15259 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC25.16■■□□□ 1.62
NPHP1O15259 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
NPHP1O15259 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC25.16■■□□□ 1.62
NPHP1O15259 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC25.16■■□□□ 1.62
NPHP1O15259 AC079598.2-202ENST00000546624 1451 ntBASIC25.16■■□□□ 1.62
NPHP1O15259 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC25.16■■□□□ 1.62
NPHP1O15259 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC25.16■■□□□ 1.62
NPHP1O15259 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
NPHP1O15259 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
NPHP1O15259 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC25.16■■□□□ 1.62
NPHP1O15259 AC005521.1-201ENST00000393351 872 ntBASIC25.16■■□□□ 1.62
NPHP1O15259 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
NPHP1O15259 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC25.16■■□□□ 1.62
NPHP1O15259 RMI2-205ENST00000576027 818 ntTSL 2 BASIC25.16■■□□□ 1.62
NPHP1O15259 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
NPHP1O15259 LINC01568-207ENST00000641790 1380 ntBASIC25.16■■□□□ 1.62
NPHP1O15259 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
NPHP1O15259 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC25.15■■□□□ 1.62
NPHP1O15259 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
NPHP1O15259 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
NPHP1O15259 KRT8P9-201ENST00000558927 1449 ntBASIC25.15■■□□□ 1.62
NPHP1O15259 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC25.15■■□□□ 1.62
NPHP1O15259 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
NPHP1O15259 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC25.15■■□□□ 1.62
NPHP1O15259 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC25.15■■□□□ 1.62
NPHP1O15259 GLDC-219ENST00000640208 420 ntTSL 2 BASIC25.15■■□□□ 1.62
NPHP1O15259 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms